Table 2

Some properties of the mutant network and the ChIP network at different thresholds

ChIP network (p < 0.01)

ChIP network (p < 0.001)

mutant network (γ = 2.0)

mutant network (γ = 2.5)

mutant network (γ = 3.0)


source genes

202

169

250

236

227

target genes

4939

2845

5396

4778

3920

genes

4980

2930

5654

4798

3959

edges

18842

6170

32017

17436

10356

edges where source gene and target gene have the same cellular role annotation in YPD http://www.proteome.com webcite

3694 (19.6%)

857 (13.9%)

4096 (12.8%)

2425 (13.9%)

1507 (14.6%)

edges per source gene

93.3

36.5

135.7

73.8

45.6


Schlitt and Brazma BMC Bioinformatics 2007 8(Suppl 6):S9   doi:10.1186/1471-2105-8-S6-S9

Open Data