Figure 5.

Illustration of the target set comparison. A In the ChIP network transcription factors are connected to their target genes (regulation set); in the mutant network the deleted genes are linked to all genes with differential expression in this particular mutant background (effectual set). B Some transcription factors are present in both networks (ChIP and mutant network); we can therefore compare the genomic localisation (regulation set) with the expression changes in the mutant cell (effectual set). Reproduced from [2]

Schlitt and Brazma BMC Bioinformatics 2007 8(Suppl 6):S9   doi:10.1186/1471-2105-8-S6-S9