This article is part of the supplement: APBioNet – Fifth International Conference on Bioinformatics (InCoB2006)
Proceedings
Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology
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* Corresponding authors: Chung-Yen Lin cylin@iis.sinica.edu.tw - Chao A Hsiung hsiung@nhri.org.tw
- † Equal contributors
1 Division of Biostatistics and Bioinformatics, National Health Research Institutes. No. 35 Keyan Rd. Zhunan, Miaoli County 350, Taiwan
2 Institute of Information Science, Academia Sinica, No. 128 Yan-Chiu-Yuan Rd., Sec. 2, Taipei 115, Taiwan
3 Institute of Fishery Science, National Taiwan University, No. 1, Sec 4, Roosevelt Road, Taipei, 10617, Taiwan
4 Stem Cell/Regenerative Medicine Program, Genomics Research Center, Academia Sinica., No. 128 Yan-Chiu-Yuan Rd., Sec. 2, Taipei 115, Taiwan
BMC Bioinformatics 2006, 7(Suppl 5):S18 doi:10.1186/1471-2105-7-S5-S18
Published: 18 December 2006Additional files
Additional File 1:
To apply Jack-knife method in the validation, in each time test set is re-sampled and the average sensitivity and specificity are calculated. The ratio between the size of the training set and test set is set to be 9:1.
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Additional File 3:
Comparison with all dataset existed in BIND with Fly-DPI (all).
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Additional File 4:
Comparison with all dataset existed in BIND with Fly-DPI (high confidence).
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Additional File 2:
Distribution of the shortest path between pairs of proteins in Fly-DPI. On average, any two proteins in the network are connected via 3.78 (all interactions) and 4.06 (interactions with high confidence) in our data, respectively.
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