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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 7 Supplement 5

APBioNet - Fifth International Conference on Bioinformatics (InCoB2006)

Proceedings

International Conference in Bioinformatics - InCoB2006

New Delhi, India

18-20 December 2006

Edited by Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan

Introduction   Open Access

Establishing bioinformatics research in the Asia Pacific

Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan BMC Bioinformatics 2006, 7(Suppl 5):S1 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome

Alan Christoffels, Richard Bartfai, Hamsa Srinivasan, Hans Komen, Laszlo Orban BMC Bioinformatics 2006, 7(Suppl 5):S2 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Evaluation and comparison of mammalian subcellular localization prediction methods

Josefine Sprenger, J Lynn Fink, Rohan D Teasdale BMC Bioinformatics 2006, 7(Suppl 5):S3 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus

Asif M Khan, AT Heiny, Kenneth X Lee, KN Srinivasan, Tin Tan, J Thomas August, Vladimir Brusic BMC Bioinformatics 2006, 7(Suppl 5):S4 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Projections for fast protein structure retrieval

Sourangshu Bhattacharya, Chiranjib Bhattacharyya, Nagasuma R Chandra BMC Bioinformatics 2006, 7(Suppl 5):S5 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Improving the performance of DomainDiscovery of protein domain boundary assignment using inter-domain linker index

Abdur R Sikder, Albert Y Zomaya BMC Bioinformatics 2006, 7(Suppl 5):S6 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris

Joo Tong, Tin Tan, Animesh A Sinha, Shoba Ranganathan BMC Bioinformatics 2006, 7(Suppl 5):S7 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes

Manisha Brahmachary, Christian Schönbach, Liang Yang, Enli Huang, Sin Tan, Rajesh Chowdhary, SPT Krishnan, Chin-Yo Lin, David A Hume, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Vladimir B Bajic BMC Bioinformatics 2006, 7(Suppl 5):S8 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria

Sarita Ranjan, Ranjit Gundu, Akash Ranjan BMC Bioinformatics 2006, 7(Suppl 5):S9 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Review   Open Access

Trends in life science grid: from computing grid to knowledge grid

Akihiko Konagaya BMC Bioinformatics 2006, 7(Suppl 5):S10 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition

Richard Tsai, Cheng-Lung Sung, Hong-Jie Dai, Hsieh-Chuan Hung, Ting-Yi Sung, Wen-Lian Hsu BMC Bioinformatics 2006, 7(Suppl 5):S11 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Curation of viral genomes: challenges, applications and the way forward

Urmila Kulkarni-Kale, Shriram G Bhosle, G Sunitha Manjari, Manali Joshi, Sandeep Bansode, Ashok S Kolaskar BMC Bioinformatics 2006, 7(Suppl 5):S12 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach

HH Lin, LY Han, HL Zhang, CJ Zheng, B Xie, ZW Cao, YZ Chen BMC Bioinformatics 2006, 7(Suppl 5):S13 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

SVM-based prediction of caspase substrate cleavage sites

Lawrence JK Wee, Tin Tan, Shoba Ranganathan BMC Bioinformatics 2006, 7(Suppl 5):S14 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Splice site identification using probabilistic parameters and SVM classification

AKMA Baten, BCH Chang, SK Halgamuge, Jason Li BMC Bioinformatics 2006, 7(Suppl 5):S15 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

SPIDer: Saccharomyces protein-protein interaction database

Xiaomei Wu, Lei Zhu, Jie Guo, Cong Fu, Hongjun Zhou, Dong Dong, Zhenbo Li, Da-Yong Zhang, Kui Lin BMC Bioinformatics 2006, 7(Suppl 5):S16 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Modelling study of dimerization in mammalian defensins

Anita Suresh, Chandra Verma BMC Bioinformatics 2006, 7(Suppl 5):S17 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology

Chung-Yen Lin, Shu-Hwa Chen, Chi-Shiang Cho, Chia-Ling Chen, Fan-Kai Lin, Chieh-Hua Lin, Pao-Yang Chen, Chen-Zen Lo, Chao A Hsiung BMC Bioinformatics 2006, 7(Suppl 5):S18 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access Highly Accessed

An evaluation of human protein-protein interaction data in the public domain

Suresh Mathivanan, Balamurugan Periaswamy, TKB Gandhi, Kumaran Kandasamy, Shubha Suresh, Riaz Mohmood, YL Ramachandra, Akhilesh Pandey BMC Bioinformatics 2006, 7(Suppl 5):S19 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

MicroTar: predicting microRNA targets from RNA duplexes

Rahul Thadani, Martti T Tammi BMC Bioinformatics 2006, 7(Suppl 5):S20 (18 December 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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