|
SDRF representation of the investigation design graph in Figure 3. |
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| Sample ID |
Characteristics [Organism] |
Characteristics [OrganismPart] |
Protocol REF |
Extract ID |
Protocol REF |
Label |
Hybridization ID |
ArrayDesign REF |
ArrayData URI |
DerivedArrayData Matrix URI |
|
|
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| liver 1 |
Homo sapiens |
liver |
P-XMPL-1 |
Extract 1 |
P-XMPL-3 |
Cy3 |
Hyb 1 |
SMD-10K |
1.txt |
FGDM.txt |
| liver 2 |
Homo sapiens |
liver |
P-XMPL-1 |
Extract 2 |
P-XMPL-3 |
Cy3 |
Hyb 1 |
SMD-10K |
1.txt |
FGDM.txt |
| kidney 1 |
Homo sapiens |
kidney |
P-XMPL-1 |
Extract 3 |
P-XMPL-3 |
Cy3 |
Hyb 2 |
SMD-10K |
2.txt |
FGDM.txt |
| kidney 2 |
Homo sapiens |
kidney |
P-XMPL-1 |
Extract 4 |
P-XMPL-3 |
Cy3 |
Hyb 2 |
SMD-10K |
2.txt |
FGDM.txt |
| brain 1 |
Homo sapiens |
brain |
P-XMPL-1 |
Extract 5 |
P-XMPL-3 |
Cy3 |
Hyb 3 |
SMD-10K |
3.txt |
FGDM.txt |
| brain 2 |
Homo sapiens |
brain |
P-XMPL-1 |
Extract 6 |
P-XMPL-3 |
Cy3 |
Hyb 3 |
SMD-10K |
3.txt |
FGDM.txt |
| Extract reference |
P-XMPL-3 |
Cy5 |
Hyb 1 |
SMD-10K |
1.txt |
FGDM.txt |
||||
| Extract reference |
P-XMPL-3 |
Cy5 |
Hyb 2 |
SMD-10K |
2.txt |
FGDM.txt |
||||
| Extract reference |
P-XMPL-3 |
Cy5 |
Hyb 3 |
SMD-10K |
3.txt |
FGDM.txt |
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|
Each 'layer' in the graph is represented by an ID column in the spreadsheet, followed by columns for each of the labels. Each path in the graph is represented by one row in the spreadsheet. | ||||||||||
Rayner et al. BMC Bioinformatics 2006 7:489 doi:10.1186/1471-2105-7-489 |
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