Table 1

Structural variants inserted into the first simulated dataset

Chr1

Bkpt1

Strand1

Chr2

Bkpt2

Strand2

Type


9

73,000,000

+

11

63,000,000

+

U


5

40,000,000

+

2

140,000,000

+

U


7

11,000,000

+

12

45,000,000

-

U


10

5,000,000

-

20

15,000,000

+

U


16

6,000,000

-

18

12,000,000

+

U


4

9,000,000

+

17

17,000,000

+

U


3

35,000,000

+

6

14,000,000

+

B


6

14,001,000

+

3

35,000,001

+

B


13

45,000,000

+

14

30,000,000

+

II


14

30,200,000

+

13

45,000,001

+

II


1

105,000,000

-

22

25,000,000

+

II


22

25,000,001

+

1

105,600,000

-

II


Structural variants inserted into the simulated dataset. U = unbalanced translocation, II = interchromosomal insertion, and B = balanced translocation. For the "II" and "B" variants, the partner breakpoints are listed consecutively. For "II" variants, the donor chromosome and its breakpoint are bolded. Note that the chr3 and chr6 balanced translocation contains a 1000-bp duplication, so it is not entirely reciprocal.

Hayes and Li BMC Bioinformatics 2013 14(Suppl 5):S6   doi:10.1186/1471-2105-14-S5-S6

Open Data