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This article is part of the supplement: Proceedings of the Third Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-seq 2013)

Open Access Proceedings

Discovering motifs that induce sequencing errors

Manuel Allhoff12345, Alexander Schönhuth2, Marcel Martin3, Ivan G Costa4, Sven Rahmann35 and Tobias Marschall2*

Author Affiliations

1 Aachen Institute for Advanced Study in Computational Engineering Science (AICES), RWTH Aachen University, Germany

2 Life Sciences Group, Centrum Wiskunde & Informatica, Amsterdam, Netherlands

3 Bioinformatics, Computer Science XI, TU Dortmund, Germany

4 Interdisciplinary Centre for Clinical Research (IZKF) & Institute for Biomedical Engineering, RWTH University Medical School, Aachen, Germany

5 Genome Informatics, Faculty of Medicine, University of Duisburg-Essen, Germany

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BMC Bioinformatics 2013, 14(Suppl 5):S1  doi:10.1186/1471-2105-14-S5-S1

Published: 10 April 2013

Additional files

Additional File 6:

Full list of (10,2)-motifs for dataset GAIIx-bs. All (10,2)-motifs found in dataset GAIIx-bs (after filtering).

Format: CSV Size: 24KB Download file

Open Data

Additional File 7:

Full list of (10,2)-motifs for dataset GAIIx-hg. All (10,2)-motifs found in dataset GAIIx-hg (after filtering).

Format: CSV Size: 32KB Download file

Open Data

Additional File 8:

Full list of (10,2)-motifs for dataset MiSeq-ec. All (10,2)-motifs found in dataset MiSeq-ec (after filtering).

Format: CSV Size: 122KB Download file

Open Data

Additional File 9:

Full list of (10,2)-motifs for dataset HiSeq-hg. All (10,2)-motifs found in dataset HiSeq-hg (after filtering).

Format: CSV Size: 155KB Download file

Open Data

Additional File 1:

Full list of (8,4)-motifs for dataset GAIIx-bs. All (8,4)-motifs found in dataset GAIIx-bs (after filtering).

Format: CSV Size: 1KB Download file

Open Data

Additional File 2:

Full list of (8,4)-motifs for dataset GAIIx-hg. All (8,4)-motifs found in dataset GAIIx-hg (after filtering).

Format: CSV Size: 1KB Download file

Open Data

Additional File 3:

Full list of (8,4)-motifs for dataset MiSeq-ec. All (8,4)-motifs found in dataset MiSeq-ec (after filtering).

Format: CSV Size: 1KB Download file

Open Data

Additional File 4:

Full list of (8,4)-motifs for dataset HiSeq-hg. All (8,4)-motifs found in dataset HiSeq-hg (after filtering).

Format: CSV Size: 4KB Download file

Open Data

Additional File 5:

Full list of (8,4)-motifs for dataset GAIIx-bs after alignment postprocessing. All (8,4)-motifs found in dataset GAIIx-bs with alignment postprocessing.

Format: CSV Size: 4KB Download file

Open Data