Table 3

Ranking methods by maximal F1 score for various measures.

BPO

MFO


Top-20

Threshold

Leaf

Top-20

Threshold

Leaf


Priors

8

8

11

7

6

11


Priors'

10

10

10

10

10

6


BLAST

9

9

9

6

9

10


GOtcha

6

6

8

2

3

9


StudentA

5

5

5

8

7

5


StudentA'

3

4

4

5

5

2


StudentB

11

11

7

11

11

7


StudentB'

2

2

1

3

4

1


StudentC

7

7

6

9

8

8


StudentC'

4

3

3

4

2

4


MetaStudent'

1

1

2

1

1

3


We calculated the maximum F1 score (Eqn. 1) for each method and curve presented in Figure 5 and ranked the methods accordingly. The number in each cell is the rank of the method in the respective category. As we evaluated 11 different methods, ranks range from 1 (best) to 11 (worst). Results for StudentB were compiled with the bug (Methods).

Hamp et al. BMC Bioinformatics 2013 14(Suppl 3):S7   doi:10.1186/1471-2105-14-S3-S7

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