This article is part of the supplement: Selected articles from the First IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS 2011): Bioinformatics

Open Access Research

PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text

Yuri Pirola12, Raffaella Rizzi1, Ernesto Picardi3, Graziano Pesole34, Gianluca Della Vedova5 and Paola Bonizzoni1*

Author Affiliations

1 Dipartimento di Informatica Sistemistica e Comunicazione, Univ. degli Studi di Milano-Bicocca, Milano, 20126, Italy

2 Centro Ricerche e Studi Agroalimentari, Parco Tecnologico Padano, Lodi, 26900, Italy

3 Dipartimento di Biochimica e Biologia Molecolare "E. Quagliariello", Univ. degli Studi di Bari, Bari, 70126, Italy

4 Istituto di Biomembrane e Bioenergetica, Consiglio Nazionale delle Ricerche, Bari, 70126, Italy

5 Dipartimento di Statistica, Univ. degli Studi di Milano-Bicocca, Milano, 20126, Italy

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BMC Bioinformatics 2012, 13(Suppl 5):S2  doi:10.1186/1471-2105-13-S5-S2

Published: 12 April 2012

Additional files

Additional file 1:

Supplementary tables. Characteristics of the first dataset and detailed results obtained in the experimental comparison.

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