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8 result(s) for 'author#Paola Bonizzoni' within BMC

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  1. The perfect phylogeny is an often used model in phylogenetics since it provides an efficient basic procedure for representing the evolution of genomic binary characters in several frameworks, such as for examp...

    Authors: Paola Bonizzoni, Anna Paola Carrieri, Gianluca Della Vedova and Gabriella Trucco
    Citation: BMC Genomics 2014 15(Suppl 6):S10
    Content type: Research Published on:

    This article is part of a Supplement: Volume 15 Supplement 6

  2. Cancer progression reconstruction is an important development stemming from the phylogenetics field. In this context, the reconstruction of the phylogeny representing the evolutionary history presents some pec...

    Authors: Simone Ciccolella, Mauricio Soto Gomez, Murray D. Patterson, Gianluca Della Vedova, Iman Hajirasouliha and Paola Bonizzoni
    Citation: BMC Bioinformatics 2020 21(Suppl 1):413
    Content type: Research Published on:

    This article is part of a Supplement: Volume 21 Supplement 1

  3. Being able to efficiently call variants from the increasing amount of sequencing data daily produced from multiple viral strains is of the utmost importance, as demonstrated during the COVID-19 pandemic, in or...

    Authors: Simone Ciccolella, Luca Denti, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola and Marco Previtali
    Citation: BMC Bioinformatics 2022 22(Suppl 15):625
    Content type: Software Published on:

    This article is part of a Supplement: Volume 22 Supplement 15

  4. Currently available methods to predict splice sites are mainly based on the independent and progressive alignment of transcript data (mostly ESTs) to the genomic sequence. Apart from often being computationall...

    Authors: Paola Bonizzoni, Raffaella Rizzi and Graziano Pesole
    Citation: BMC Bioinformatics 2005 6:244
    Content type: Software Published on:

  5. Haplotype assembly is the process of assigning the different alleles of the variants covered by mapped sequencing reads to the two haplotypes of the genome of a human individual. Long reads, which are nowadays...

    Authors: Stefano Beretta, Murray D. Patterson, Simone Zaccaria, Gianluca Della Vedova and Paola Bonizzoni
    Citation: BMC Bioinformatics 2018 19:252
    Content type: Methodology article Published on:

  6. A challenging issue in designing computational methods for predicting the gene structure into exons and introns from a cluster of transcript (EST, mRNA) sequences, is guaranteeing accuracy as well as efficienc...

    Authors: Yuri Pirola, Raffaella Rizzi, Ernesto Picardi, Graziano Pesole, Gianluca Della Vedova and Paola Bonizzoni
    Citation: BMC Bioinformatics 2012 13(Suppl 5):S2
    Content type: Research Published on:

    This article is part of a Supplement: Volume 13 Supplement 5

  7. While the reconstruction of transcripts from a sample of RNA-Seq data is a computationally expensive and complicated task, the detection of splicing events from RNA-Seq data and a gene annotation is computatio...

    Authors: Luca Denti, Raffaella Rizzi, Stefano Beretta, Gianluca Della Vedova, Marco Previtali and Paola Bonizzoni
    Citation: BMC Bioinformatics 2018 19:444
    Content type: Methodology article Published on:

  8. The inversion distance, that is the distance between two unichromosomal genomes with the same content allowing only inversions of DNA segments, can be computed thanks to a pioneering approach of Hannenhalli an...

    Authors: Eyla Willing, Simone Zaccaria, Marília DV Braga and Jens Stoye
    Citation: BMC Bioinformatics 2013 14(Suppl 15):S3
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 14 Supplement 15