Benchmark experiments. Dependency of practical runtimes on parameter settings. First line: number of collections, on average 25.000 intervals per collection; Second line: number of intervals, fixed number of collections; Third line: length of target genome, fixed number of collections and intervals; Fourth line: average interval length relative to genome length for collections generated with μ between 1 and the genome length. The dotted line shows the number of non-redundant base intervals (scaled by secondary y-axis times 105); the dashed line shows the number of MOIs (scaled by secondary y-axis times 103).
Jahn et al. BMC Bioinformatics 2012 13(Suppl 19):S7 doi:10.1186/1471-2105-13-S19-S7