Email updates

Keep up to date with the latest news and content from BMC Bioinformatics and BioMed Central.

This article is part of the supplement: Eleventh International Conference on Bioinformatics (InCoB2012): Bioinformatics

Open Access Proceedings

TranSeqAnnotator: large-scale analysis of transcriptomic data

Ranjeeta Menon1, Gagan Garg1, Robin B Gasser2 and Shoba Ranganathan13*

Author Affiliations

1 Department of Chemistry and Biomolecular Sciences and ARC Centre of Excellence, Macquarie University, Sydney, NSW 2109, Australia

2 Department of Veterinary Sciences, The University of Melbourne, Werribee, VIC 3030, Australia

3 Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597

For all author emails, please log on.

BMC Bioinformatics 2012, 13(Suppl 17):S24  doi:10.1186/1471-2105-13-S17-S24

Published: 13 December 2012

Additional files

Additional file 1:

GO annotation for putative peptides. Gene Ontology annotations from Interproscan reported.

Format: XLSX Size: 29KB Download file

Open Data

Additional file 2:

KEGG Pathway analysis of proteins (E-value threshold of 1E-05). Database matches reported.

Format: XLSX Size: 11KB Download file

Open Data

Additional file 3:

Domain description for the protein sequences. Interproscan domains reported.

Format: XLSX Size: 27KB Download file

Open Data

Additional file 4:

Top BLAST hits for secreted proteins. Non-redundant database matches reported.

Format: XLSX Size: 13KB Download file

Open Data