Table 4

Gapped-dipeptide signatures for non-nuclear proteins

Gapped-dipeptide signatures for non-nuclear proteins


L2L

L2F

F5L

F2L

M0V

M1V

V0M

V1M

V3V

V2V

A3V

A8V

A12I

A6I

A4I

I2A

E11L

L11Q

Q11L

L11E

Q5W

Q13W

S7W

Q12W

I13I

I9I

I12I

I10I

Y6Y

Y0Y

Y5Y

Y12Y

V0N

L2N

I2Q

I2S

R11A

R8A

R1A

K1L

L1K

L0K

F10A

F11A

F11S

F10S

L8A

L4A

L5A

A6L

F3F

F4F

F10F

F13F

L8L

L3L

I3L

L12L

V11D

V13D

V7D

V4D

I5E

I4D

I12E

E5I

W8P

W9P

W10P

W3P

V5V

V13V

G2V

G11V

S2S

S4S

A5S

S9S

W1H

H10W

W8H

Y10W

M3M

M2M

M13M

M0M

T0T

T13T

T7T

T1T

H1Y

H3Y

H13Y

H7Y

F12C

F9C

F0C

F10C

A7K

A3K

A10A

A4A

A5A

A9A

Y2G

Y0G

G0Y

G0F

F2K

K0F

K3F

Q13L

L13Q

L1T

L10Q

C12I

I12C

C10I

C3I

W4E

W0L

W5L

W1L

Y7T

Y7V

Y6V

V5Y

E1M

L9K

R11M

I10K

I13K

F13K

T1K

K5I

K2V

H10L

L12H

H8L

E13L

E13I

E10V

N13L

K13N

K12N

I9N

V10N

V12N

V1N

R10Q

D3R

R2D

V7G

M11G

V13G

L3G

I6N

I5N

V9I

I11N

K7L

V4H

H12V

V8H

H4V

F9E

D13L

D12L

L3D

D9L

H11M

L10M

M7H

H12I

E9L

E11A

E12A

A5E

E10A

I4N

N0I

N13I

N9I


Our method propose 183 gapped-dipeptide signatures for non-nuclear proteins. Signatures that have been reported as motifs for nuclear export signals (NESs) are shown in bold face.

Su et al. BMC Bioinformatics 2012 13(Suppl 17):S13   doi:10.1186/1471-2105-13-S17-S13

Open Data