Table 3

Gapped-dipeptide signatures for nuclear proteins

Gapped-dipeptide signatures for nuclear proteins


G2P

G11P

G8P

P11P

P5P

P3Q

P5Q

K1K

K6K

K10K

K2K

K5K

K0K

K3K

K4K

E4E

E1E

E8E

E0E

P1T

P0T

P6T

P10T

G2G

G1G

G5G

P1S

S6P

P3G

G4P

P0G

Q11Q

Q10Q

Q5Q

R13R

R11R

R10R

R9R

R12R

R7R

R3R

R4R

C8S

S2C

S6C

N6P

P12N

S9D

E12D

D12D

D4D

D13D

S12T

S8T

S10T

K0R

K2R

R2R

R0R

R0K

R2K

K1R

R1K

R3K

K4R

M3P

P12M

R1H

Q8R

Q2H

H0R

S7Q

Q12S

S13H

S10H

S2H

H6S

S12H

P7Y

P4Y

Y5P

N3N

N6N

N0N

K1H

H0K

H6K

K10H

D2S

D5S

K8S

D0S

N8N

H8N

H5N

S6L

T4E

E13S

T6E

S13S

S10S

H0H

H4H

H1H

H13H

N0E

N0K

N4K

K1N

D2T

G6L

G8L

E8C

K1C

K5C

K7C

C2C

C0C

K3C

C4K

H8C

H12C

H13C

H10C

D6I

D10I

D12I

A13Q

A6Q

Q9A

Q6A

S11S

M3S

Q13T

K9T

Q1T

Q9T

N1S

S7N

N8S

H1I

I0H

E12I

S2E

E11I

D6A

S3D

D8A

M13Q

M3Q

L13S

L12S

V6S

S9N

S13G

E9S

S3S

N0S

S3N

H1Q

H10Q

H3Q

H5Q

T7E

T8E

T12E

T9E

W13K

W11K

N11I

I12N

M13D

M2D

F13D

L1H

H1L

A3H

L5H

R0G

A9H

H10A

P3R

A10H


Our method propose 183 gapped-dipeptide signatures for nuclear proteins. Signatures that have been reported as motifs for nuclear localization signals (NLSs) are shown in bold face.

Su et al. BMC Bioinformatics 2012 13(Suppl 17):S13   doi:10.1186/1471-2105-13-S17-S13

Open Data