Table 13

ID task primary evaluation results: F-scores by event type

FAUST

UMass

Stanford

ConcordU

UTurku

PNNL

PredX

Size


GENE EXPRESSION

70.68

66.43

54.00

56.57

64.88

53.33

0.00

512

TRANSCRIPTION

69.66

68.24

60.00

70.89

57.14

0.00

53.85

77

PROTEIN CATABOLISM

75.00

72.73

20.00

66.67

33.33

11.76

0.00

33

PHOSPHORYLATION

64.00

66.67

40.00

54.55

60.61

64.29

40.00

69

LOCALIZATION

33.33

14.29

31.58

20.00

66.67

20.69

0.00

49

Simple event total

68.47

63.55

52.72

56.78

62.67

43.87

18.18

740

BINDING

31.30

34.62

23.44

40.00

22.22

20.00

28.28

156

PROCESS

65.69

62.26

73.57

67.17

41.57

51.04

53.27

901

Non-regulation total

63.78

60.68

63.59

62.43

46.39

47.34

43.65

1797


REGULATION

35.44

30.49

17.67

19.43

22.96

0.00

2.16

267

POSITIVE REGULATION

47.50

49.49

34.78

23.41

41.28

24.60

21.02

455

NEGATIVE REGULATION

58.86

60.45

44.44

47.96

52.11

25.70

9.49

260

Regulation total

47.07

46.65

33.02

28.87

39.49

18.45

9.71

982


Subtotal

57.28

55.03

52.09

46.60

43.33

37.53

28.38

2779


NEGATION

0.00

0.00

0.00

22.92

32.91

0.00

0.00

96

SPECULATION

0.00

0.00

0.00

3.23

15.00

0.00

0.00

44

Modification total

0.00

0.00

0.00

11.82

26.89

0.00

0.00

140


Total

55.59

53.42

50.63

44.21

42.57

36.27

27.49

2919


The Size column gives the number of annotations of each type in the given data (training+development). Best result for each type shown in bold.

Pyysalo et al. BMC Bioinformatics 2012 13(Suppl 11):S2   doi:10.1186/1471-2105-13-S11-S2

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