Articles

BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 13 Supplement 11

Selected articles from the BioNLP Shared Task 2011

Research

BioNLP Shared Task 2011

Portland, OR, USA

23-24 June 2011

Edited by Jin-Dong Kim, Sampo Pyysalo, Claire Nédellec, Sophia Ananiadou and Jun'ichi Tsujii

Conference website

The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011

Jin-Dong Kim, Ngan Nguyen, Yue Wang, Jun'ichi Tsujii, Toshihisa Takagi, Akinori Yonezawa BMC Bioinformatics 2012, 13(Suppl 11):S1 (26 June 2012)

Abstract | Full text | PDF | PubMed

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011

Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Dan Sullivan, Chunhong Mao, Chunxia Wang, Bruno Sobral, Jun'ichi Tsujii, Sophia Ananiadou BMC Bioinformatics 2012, 13(Suppl 11):S2 (26 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

BioNLP Shared Task - The Bacteria Track

Robert Bossy, Julien Jourde, Alain-Pierre Manine, Philippe Veber, Erick Alphonse, Maarten van de Guchte, Philippe Bessières, Claire Nédellec BMC Bioinformatics 2012, 13(Suppl 11):S3 (26 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

University of Turku in the BioNLP'11 Shared Task

Jari Björne, Filip Ginter, Tapio Salakoski BMC Bioinformatics 2012, 13(Suppl 11):S4 (26 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Biomedical event extraction from abstracts and full papers using search-based structured prediction

Andreas Vlachos, Mark Craven BMC Bioinformatics 2012, 13(Suppl 11):S5 (26 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Semantically linking molecular entities in literature through entity relationships

Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer BMC Bioinformatics 2012, 13(Suppl 11):S6 (26 June 2012)

Biological event composition

Halil Kilicoglu, Sabine Bergler BMC Bioinformatics 2012, 13(Suppl 11):S7 (26 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Event extraction of bacteria biotopes: a knowledge-intensive NLP-based approach

Zorana Ratkovic, Wiktoria Golik, Pierre Warnier BMC Bioinformatics 2012, 13(Suppl 11):S8 (26 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Combining joint models for biomedical event extraction

David McClosky, Sebastian Riedel, Mihai Surdeanu, Andrew McCallum, Christopher D Manning BMC Bioinformatics 2012, 13(Suppl 11):S9 (26 June 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central