Table 1

EPI event types and their arguments

Type

Core arguments

Additional arguments


HYDROXYLATION

Theme(PROTEIN)

Site(ENTITY)

DEHYDROXYLATION

Theme(PROTEIN)

Site(ENTITY)

PHOSPHORYLATION

Theme(PROTEIN)

Site(ENTITY)

DEPHOSPHORYLATION

Theme(PROTEIN)

Site(ENTITY)

UBIQUITINATION

Theme(PROTEIN)

Site(ENTITY)

DEUBIQUITINATION

Theme(PROTEIN)

Site(ENTITY)

DNA METHYLATION

Theme(PROTEIN)

Site(ENTITY)

DNA DEMETHYLATION

Theme(PROTEIN)

Site(ENTITY)

GLYCOSYLATION

Theme(PROTEIN)

Site(ENTITY), Sidechain(ENTITY)

DEGLYCOSYLATION

Theme(PROTEIN)

Site(ENTITY), Sidechain(ENTITY)

ACETYLATION

Theme(PROTEIN)

Site(ENTITY), Contextgene(PROTEIN)

DEACETYLATION

Theme(PROTEIN)

Site(ENTITY), Contextgene(PROTEIN)

METHYLATION

Theme(PROTEIN)

Site(ENTITY), Contextgene(PROTEIN)

DEMETHYLATION

Theme(PROTEIN)

Site(ENTITY), Contextgene(PROTEIN)


CATALYSIS

Theme(Event), Cause(PROTEIN)


The type of entity allowed as argument is specified in parenthesis.

Pyysalo et al. BMC Bioinformatics 2012 13(Suppl 11):S2   doi:10.1186/1471-2105-13-S11-S2

Open Data