Table 1

Parameters used in simulation data

Total SVs

200

Reference genome

Human chromosome 22 (Build 37 ref)

Distribution of SV length

N(50, 5), N(80, 8), N(100, 10), N(120, 12),

N(150, 15), N(170, 17), N(200, 20), N(400, 40)

N(600, 60), N(800, 80), N(1000, 100)

N(2000, 200), N(4000, 400)

The rate of single nucleotide alterations

1/10000

The number of tandem repeat

N(40, 20) (>1)

Mean depth of coverage

5, 10, 15, 20, 40

Read lengths

50, 75, 100, 108

Distribution of template lengths

N(400, 50)


We generated various data each of which has different distribution of SV length, mean depth of coverage or read lengths. Values with bold type are the default (for example, if mean depth of coverage is set to five, then the distribution of SV length and read lengths is set to N(1000, 100) and 108.)

Suzuki et al. BMC Bioinformatics 2011 12(Suppl 14):S7   doi:10.1186/1471-2105-12-S14-S7

Open Data