Additional file 1.

Basic statistics for de novo assembly with D. melanogaster data sets. The outcomes of transcript assemblies by each method: SOAPdenovo, SOAPdenovo-MK, ABySS, trans-ABySS, Oases, Oases-MK and Trinity. Assembled transcripts with no less than 100 bases are included. Low quality transcripts are defined as transcripts with more than 5% ambiguous nucleotides. #Since scaffolding system hasn’t been built in Trinity yet, the measure of low quality transcripts for Trinity is left as “-”.

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Zhao et al. BMC Bioinformatics 2011 12(Suppl 14):S2   doi:10.1186/1471-2105-12-S14-S2