Table 1

Datasets

Dataset

Technology

SNVs & Indels

SV

Translocations

Reference


European-Venter

Sanger

Y

Y

N

Levy et al. 2007 [3]

European-Watson

454

Y

Y

N

Wheeler et al. 2008 [4]

European- Quake

Helicos

Y

Y

N

Pushkarev et al. 2009 [5]

Asian

Illumina

Y

Y

N

Wang et al. 2008 [6]

Yoruban 18507

Illumina

Y

Y

N

Bentley et al. 2008 [7]

Yoruban 18507

SOLiD

Y

Y

N

McKernan et al. 2009 [8]

Korean

Illumina

Y

Y

N

Ahn et al. 2009 [9]

Korean-AKI

Illumina

Y

Y

N

Kim et al. 2009 [10]

3 human genomes

Complete Genomics

Y

Y

N

Drmanac et al. 2009 [11]

AML T/N

Illumina

Y

Y

N

Ley et al. 2008 [12]

AML genome

Illumina

Y

Y

N

Mardis et al. 2009 [13]

Melanoma

Illumina

Y

Y

N

Pleasance et al. 2010 [15]

Lung cancer

SOLiD

Y

Y

N

Pleasance et al. 2010 [14]

U87MG

SOLiD

Y

Y

Y

Clark et al. 2010 [16]


Fourteen whole genome datasets were loaded into the database, including the U87MG genome, with the March 2006 assembly of the human genome used as reference (NCBI36/hg18). Variant types (SNVs, small/large indels, SVs, etc) loaded and publication references are noted for each respective dataset. This table was adapted from Snyder et al. 2010.

O’Connor et al. BMC Bioinformatics 2010 11(Suppl 12):S2   doi:10.1186/1471-2105-11-S12-S2

Open Data