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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 11 Supplement 12

Proceedings of the 11th Annual Bioinformatics Open Source Conference (BOSC) 2010

Proceedings

The 11th Annual Bioinformatics Open Source Conference (BOSC) 2010

Boston, MA, USA

9-10 July 2010

Edited by Kam D Dahlquist

Additional Information | Conference website

Proceedings   Open Access Highly Accessed

An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics

Ronald C Taylor BMC Bioinformatics 2010, 11(Suppl 12):S1 (21 December 2010)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

SeqWare Query Engine: storing and searching sequence data in the cloud

Brian D O’Connor, Barry Merriman, Stanley F Nelson BMC Bioinformatics 2010, 11(Suppl 12):S2 (21 December 2010)

Abstract | Full text | PDF

Proceedings   Open Access

Hybrid cloud and cluster computing paradigms for life science applications

Judy Qiu, Jaliya Ekanayake, Thilina Gunarathne, Jong Choi, Seung-Hee Bae, Hui Li, Bingjing Zhang, Tak-Lon Wu, Yang Ruan, Saliya Ekanayake, Adam Hughes, Geoffrey Fox BMC Bioinformatics 2010, 11(Suppl 12):S3 (21 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access Highly Accessed

Galaxy CloudMan: delivering cloud compute clusters

Enis Afgan, Dannon Baker, Nate Coraor, Brad Chapman, Anton Nekrutenko, James Taylor BMC Bioinformatics 2010, 11(Suppl 12):S4 (21 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Community-driven computational biology with Debian Linux

Steffen Möller, Hajo Krabbenhöft, Andreas Tille, David Paleino, Alan Williams, Katy Wolstencroft, Carole Goble, Richard Holland, Dominique Belhachemi, Charles Plessy BMC Bioinformatics 2010, 11(Suppl 12):S5 (21 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures

Jens Lichtenberg, Kyle Kurz, Xiaoyu Liang, Rami Al-ouran, Lev Neiman, Lee J Nau, Joshua D Welch, Edwin Jacox, Thomas Bitterman, Klaus Ecker, Laura Elnitski, Frank Drews, Stephen Lee, Lonnie R Welch BMC Bioinformatics 2010, 11(Suppl 12):S6 (21 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

SADI, SHARE, and the in silico scientific method

Mark D Wilkinson, Luke McCarthy, Benjamin Vandervalk, David Withers, Edward Kawas, Soroush Samadian BMC Bioinformatics 2010, 11(Suppl 12):S7 (21 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

ONTO-ToolKit: enabling bio-ontology engineering via Galaxy

Erick Antezana, Aravind Venkatesan, Chris Mungall, Vladimir Mironov, Martin Kuiper BMC Bioinformatics 2010, 11(Suppl 12):S8 (21 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

The Musite open-source framework for phosphorylation-site prediction

Jianjiong Gao, Dong Xu BMC Bioinformatics 2010, 11(Suppl 12):S9 (21 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

interPopula: a Python API to access the HapMap Project dataset

Tiago Antao BMC Bioinformatics 2010, 11(Suppl 12):S10 (21 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators

Laurent Gautier BMC Bioinformatics 2010, 11(Suppl 12):S11 (21 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button

Morris A Swertz, Martijn Dijkstra, Tomasz Adamusiak, Joeri K van der Velde, Alexandros Kanterakis, Erik T Roos, Joris Lops, Gudmundur A Thorisson, Danny Arends, George Byelas, Juha Muilu, Anthony J Brookes, Engbert O de Brock, Ritsert C Jansen, Helen Parkinson BMC Bioinformatics 2010, 11(Suppl 12):S12 (21 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

IPRStats: visualization of the functional potential of an InterProScan run

Ryan J Kelly, David E Vincent, Iddo Friedberg BMC Bioinformatics 2010, 11(Suppl 12):S13 (21 December 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central


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