Table 2

Ranked parameters

Rank

Score

Parameter


1

84.3

Seed score

2

83.4

Positional pair score

3

81.0

Matrix score

4

80.6

WC pairs

5

78.8

Deviation positional score

6

77.2

Deviation matrix score

7

75.0

Out seed score

8

72.5

Wobble pairs

9

70.4

Normalized free energy

10

68.6

Mismatches

11

68.3

Hybridization energy

12

68.0

Free energy

13

65.5

Difference in hybridization energy

14

57.0

Length - bulge

15

52.4

Number-bulges

16

50.1

Proportion


Chandra et al. BMC Bioinformatics 2010 11(Suppl 1):S2   doi:10.1186/1471-2105-11-S1-S2

Open Data