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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 11 Supplement 1

Selected articles from the Eighth Asia-Pacific Bioinformatics Conference (APBC 2010)

Research

The Eighth Asia Pacific Bioinformatics Conference (APBC 2010)

Bangalore, India

18-21 January 2010

Edited by Laxmi Parida and Gene Myers

Conference website

Introduction   Open Access

APBC 2010. The Eighth Asia Pacific Bioinformatics Conference Bangalore, India, 18-21 January 2010

Laxmi Parida, Gene Myers BMC Bioinformatics 2010, 11(Suppl 1):I1 (18 January 2010)

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Research   Open Access

Nonnegative principal component analysis for mass spectral serum profiles and biomarker discovery

Henry Han BMC Bioinformatics 2010, 11(Suppl 1):S1 (18 January 2010)

Abstract | Full text | PDF | PubMed

Research   Open Access Highly Accessed

MTar: a computational microRNA target prediction architecture for human transcriptome

Vinod Chandra, Reshmi Girijadevi, Achuthsankar S Nair, Sreenadhan S Pillai, Radhakrishna M Pillai BMC Bioinformatics 2010, 11(Suppl 1):S2 (18 January 2010)

Abstract | Full text | PDF | PubMed

Research   Open Access

Predicting the protein-protein interactions using primary structures with predicted protein surface

Darby Chang, Yu-Tang Syu, Po-Chang Lin BMC Bioinformatics 2010, 11(Suppl 1):S3 (18 January 2010)

Abstract | Full text | PDF | PubMed

Research   Open Access

Better score function for peptide identification with ETD MS/MS spectra

Xiaowen Liu, Baozhen Shan, Lei Xin, Bin Ma BMC Bioinformatics 2010, 11(Suppl 1):S4 (18 January 2010)

Abstract | Full text | PDF | PubMed

Research   Open Access

A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data

Pengyi Yang, Bing B Zhou, Zili Zhang, Albert Y Zomaya BMC Bioinformatics 2010, 11(Suppl 1):S5 (18 January 2010)

Abstract | Full text | PDF | PubMed

Research   Open Access

Genome-wide sequence-based prediction of peripheral proteins using a novel semi-supervised learning technique

Nitin Bhardwaj, Mark Gerstein, Hui Lu BMC Bioinformatics 2010, 11(Suppl 1):S6 (18 January 2010)

Abstract | Full text | PDF | PubMed

Research   Open Access

Molecular dynamics simulation studies and in vitro site directed mutagenesis of avian beta-defensin Apl_AvBD2

Soja Soman, Krishnankutty Sivakumar, Easwaran Sreekumar BMC Bioinformatics 2010, 11(Suppl 1):S7 (18 January 2010)

Abstract | Full text | PDF | PubMed

Research   Open Access

Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships

Junhee Seok, Amit Kaushal, Ronald W Davis, Wenzhong Xiao BMC Bioinformatics 2010, 11(Suppl 1):S8 (18 January 2010)

Abstract | Full text | PDF | PubMed

Research   Open Access

Prediction of protein structural classes for low-homology sequences based on predicted secondary structure

Jian-Yi Yang, Zhen-Ling Peng, Xin Chen BMC Bioinformatics 2010, 11(Suppl 1):S9 (18 January 2010)

Abstract | Full text | PDF | PubMed

Research   Open Access

PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship

Inkyung Jung, Akihisa Matsuyama, Minoru Yoshida, Dongsup Kim BMC Bioinformatics 2010, 11(Suppl 1):S10 (18 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Fast motif recognition via application of statistical thresholds

Christina Boucher, James King BMC Bioinformatics 2010, 11(Suppl 1):S11 (18 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Short clones or long clones? A simulation study on the use of paired reads in metagenomics

Suparna Mitra, Max Schubach, Daniel H Huson BMC Bioinformatics 2010, 11(Suppl 1):S12 (18 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

In silico screening of herbal and nanoparticle lead compounds for effectivity against H5N1, H1N1 neuraminidase and telomerase

Sayak Ganguli, Manjita Mazumder, Protip Basu, Paushali Roy, Sayani Mitra, Abhijit Datta BMC Bioinformatics 2010, 11(Suppl 1):S13 (18 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access Highly Accessed

Prediction of novel miRNAs and associated target genes in Glycine max

Trupti Joshi, Zhe Yan, Marc Libault, Dong-Hoon Jeong, Sunhee Park, Pamela J Green, D Janine Sherrier, Andrew Farmer, Greg May, Blake C Meyers, Dong Xu, Gary Stacey BMC Bioinformatics 2010, 11(Suppl 1):S14 (18 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access Highly Accessed

MrsRF: an efficient MapReduce algorithm for analyzing large collections of evolutionary trees

Suzanne J Matthews, Tiffani L Williams BMC Bioinformatics 2010, 11(Suppl 1):S15 (18 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Classification of protein sequences by means of irredundant patterns

Matteo Comin, Davide Verzotto BMC Bioinformatics 2010, 11(Suppl 1):S16 (18 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Amino acid classification based spectrum kernel fusion for protein subnuclear localization

Suyu Mei, Wang Fei BMC Bioinformatics 2010, 11(Suppl 1):S17 (18 January 2010)

Abstract | Full text | PDF | PubMed

Research   Open Access

Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso

Can Yang, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu BMC Bioinformatics 2010, 11(Suppl 1):S18 (18 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

AntiBP2: improved version of antibacterial peptide prediction

Sneh Lata, Nitish K Mishra, Gajendra PS Raghava BMC Bioinformatics 2010, 11(Suppl 1):S19 (18 January 2010)

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