Table 2

Repartition of the E. Coli TRN in MixNet classes.

Operon

class id

out degree

in degree


yhdG_fis

2

26

0


arcA

4

20

1

argR

4

6

0

cytR

4

7

0

fadR

4

5

0

FruR

4

7

0

himA†,‡

4

21

0

hns

4

7

1

lrp

4

14

0

marRAB

4

5

1

metJ

4

4

0

nlpD_rpoS*

4

14

0

ompR_envZ

4

6

1

oxyR

4

4

0

purR

4

16

0

rob

4

12

0

rpoN*

4

13

0

soxS

4

6

1


cpxAR

6

9

1

flhDC

6

7

3

fliAZY*

6

12

2

fur

6

9

1

rpoH*

6

10

4


rpoE _rseABC*

7

24

0

fnr

9

22

0

narL

9

13

0


crp

12

72

0


List of operons which correspond to regulatory operons in the Coli regulation network with Q = 12 groups. Global TF from [35]. Note that flhDC is a master compound regulator for motility and chemostatis, and has not yet been reported to regulate other TFs [36]. himA is the a-subunit of the Integration Host Factor. * for σ-factors.

Picard et al. BMC Bioinformatics 2009 10(Suppl 6):S17   doi:10.1186/1471-2105-10-S6-S17

Open Data