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BMC Bioinformatics

Supplements

Editor-in-Chief
Melissa Norton, MD

Biology Editor
Penelope Webb, PhD

In-house Editor
Tim Sands PhD



BMC Bioinformatics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 10 Suppl 6
European Molecular Biology Network (EMBnet) Conference 2008: 20th Anniversary Celebration. Leading applications and technologies in bioinformatics
Proceedings
from European Molecular Biology Network (EMBnet) Conference 2008: 20th Anniversary Celebration
Martina Franca, Italy. 1820 September 2008
Edited by Erik Bongcam-Rudloff, Domenica D'Elia, Andreas Gisel, Sophia Kossida, Kimmo Mattila and Lubos Klucar

Introduction
The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community
Domenica D'Elia, Andreas Gisel, Nils-Einar Eriksson, Sophia Kossida, Kimmo Mattila, Lubos Klucar, Erik Bongcam-Rudloff
BMC Bioinformatics 2009, 10(Suppl 6):S1 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Proceedings
Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements
Teresa M Creanza, David S Horner, Annarita D'Addabbo, Rosalia Maglietta, Flavio Mignone, Nicola Ancona, Graziano Pesole
BMC Bioinformatics 2009, 10(Suppl 6):S2 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Databases of homologous gene families for comparative genomics
Simon Penel, Anne-Muriel Arigon, Jean-Franois Dufayard, Anne-Sophie Sertier, Vincent Daubin, Laurent Duret, Manolo Gouy, Guy Perrire
BMC Bioinformatics 2009, 10(Suppl 6):S3 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
RetroTector online, a rational tool for analysis of retroviral elements in small and medium size vertebrate genomic sequences
Gran Sperber, Anders Lvgren, Nils-Einar Eriksson, Farid Benachenhou, Jonas Blomberg
BMC Bioinformatics 2009, 10(Suppl 6):S4 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
RegExpBlasting (REB), a Regular Expression Blasting algorithm based on multiply aligned sequences
Francesco Rubino, Marcella Attimonelli
BMC Bioinformatics 2009, 10(Suppl 6):S5 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes
Endre Sebestyn, Tibor Nagy, Sndor Suhai, Endre Barta
BMC Bioinformatics 2009, 10(Suppl 6):S6 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
The Mycoplasma conjunctivae genome sequencing, annotation and analysis
Sandra P Calderon-Copete, George Wigger, Christof Wunderlin, Tobias Schmidheini, Joachim Frey, Michael A Quail, Laurent Falquet
BMC Bioinformatics 2009, 10(Suppl 6):S7 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Expression pattern divergence of duplicated genes in rice
Zhe Li, He Zhang, Song Ge, Xiaocheng Gu, Ge Gao, Jingchu Luo
BMC Bioinformatics 2009, 10(Suppl 6):S8 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Functional assessment of time course microarray data
Mara Jos Nueda, Patricia Sebastin, Sonia Tarazona, Francisco Garca-Garca, Joaqun Dopazo, Alberto Ferrer, Ana Conesa
BMC Bioinformatics 2009, 10(Suppl 6):S9 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data
Ernesto Picardi, Flavio Mignone, Graziano Pesole
BMC Bioinformatics 2009, 10(Suppl 6):S10 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
GIBA: a clustering tool for detecting protein complexes
Charalampos N Moschopoulos, Georgios A Pavlopoulos, Reinhard Schneider, Spiridon D Likothanassis, Sophia Kossida
BMC Bioinformatics 2009, 10(Suppl 6):S11 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
'Brukin2D': a 2D visualization and comparison tool for LC-MS data
Dimosthenis Tsagkrasoulis, Panagiotis Zerefos, George Loudos, Antonia Vlahou, Marc Baumann, Sophia Kossida
BMC Bioinformatics 2009, 10(Suppl 6):S12 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
A chemogenomics view on protein-ligand spaces
Helena Strmbergsson, Gerard J Kleywegt
BMC Bioinformatics 2009, 10(Suppl 6):S13 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
iBarcode.org: web-based molecular biodiversity analysis
Gregory AC Singer, Mehrdad Hajibabaei
BMC Bioinformatics 2009, 10(Suppl 6):S14 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria
Monica Santamaria, Saverio Vicario, Graziano Pappad, Gaetano Scioscia, Claudio Scazzocchio, Cecilia Saccone
BMC Bioinformatics 2009, 10(Suppl 6):S15 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Modeling heterocyst pattern formation in cyanobacteria
Ziomara P Gerdtzen, J Cristian Salgado, Axel Osses, Juan A Asenjo, Ivan Rapaport, Barbara A Andrews
BMC Bioinformatics 2009, 10(Suppl 6):S16 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Deciphering the connectivity structure of biological networks using MixNet
Franck Picard, Vincent Miele, Jean-Jacques Daudin, Ludovic Cottret, Stphane Robin
BMC Bioinformatics 2009, 10(Suppl 6):S17 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX
lvaro Martnez Barrio, Erik Lagercrantz, Gran O Sperber, Jonas Blomberg, Erik Bongcam-Rudloff
BMC Bioinformatics 2009, 10(Suppl 6):S18 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Visualising biological data: a semantic approach to tool and database integration
Steve Pettifer, David Thorne, Philip McDermott, James Marsh, Alice Villger, Douglas B Kell, Teresa K Attwood
BMC Bioinformatics 2009, 10(Suppl 6):S19 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Proceedings
Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application
Maria G Roubelakis, Pantelis Zotos, Georgios Papachristoudis, Ioannis Michalopoulos, Kalliopi I Pappa, Nicholas P Anagnou, Sophia Kossida
BMC Bioinformatics 2009, 10(Suppl 6):S20 (16June2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

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