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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 10 Supplement 6

European Molecular Biology Network (EMBnet) Conference 2008: 20th Anniversary Celebration. Leading applications and technologies in bioinformatics

Proceedings

European Molecular Biology Network (EMBnet) Conference 2008: 20th Anniversary Celebration

Martina Franca, Italy

18-20 September 2008

Edited by Erik Bongcam-Rudloff, Domenica D'Elia, Andreas Gisel, Sophia Kossida, Kimmo Mattila and Lubos Klucar

Additional Information | Conference website

Introduction   Open Access

The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community

Domenica D'Elia, Andreas Gisel, Nils-Einar Eriksson, Sophia Kossida, Kimmo Mattila, Lubos Klucar, Erik Bongcam-Rudloff BMC Bioinformatics 2009, 10(Suppl 6):S1 (16 June 2009)

Abstract | Full text | PDF | PubMed

Proceedings   Open Access

Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements

Teresa M Creanza, David S Horner, Annarita D'Addabbo, Rosalia Maglietta, Flavio Mignone, Nicola Ancona, Graziano Pesole BMC Bioinformatics 2009, 10(Suppl 6):S2 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Databases of homologous gene families for comparative genomics

Simon Penel, Anne-Muriel Arigon, Jean-François Dufayard, Anne-Sophie Sertier, Vincent Daubin, Laurent Duret, Manolo Gouy, Guy Perrière BMC Bioinformatics 2009, 10(Suppl 6):S3 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

RetroTector online, a rational tool for analysis of retroviral elements in small and medium size vertebrate genomic sequences

Göran Sperber, Anders Lövgren, Nils-Einar Eriksson, Farid Benachenhou, Jonas Blomberg BMC Bioinformatics 2009, 10(Suppl 6):S4 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

RegExpBlasting (REB), a Regular Expression Blasting algorithm based on multiply aligned sequences

Francesco Rubino, Marcella Attimonelli BMC Bioinformatics 2009, 10(Suppl 6):S5 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes

Endre Sebestyén, Tibor Nagy, Sándor Suhai, Endre Barta BMC Bioinformatics 2009, 10(Suppl 6):S6 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

The Mycoplasma conjunctivae genome sequencing, annotation and analysis

Sandra P Calderon-Copete, George Wigger, Christof Wunderlin, Tobias Schmidheini, Joachim Frey, Michael A Quail, Laurent Falquet BMC Bioinformatics 2009, 10(Suppl 6):S7 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Expression pattern divergence of duplicated genes in rice

Zhe Li, He Zhang, Song Ge, Xiaocheng Gu, Ge Gao, Jingchu Luo BMC Bioinformatics 2009, 10(Suppl 6):S8 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Functional assessment of time course microarray data

María Nueda, Patricia Sebastián, Sonia Tarazona, Francisco García-García, Joaquín Dopazo, Alberto Ferrer, Ana Conesa BMC Bioinformatics 2009, 10(Suppl 6):S9 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data

Ernesto Picardi, Flavio Mignone, Graziano Pesole BMC Bioinformatics 2009, 10(Suppl 6):S10 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

GIBA: a clustering tool for detecting protein complexes

Charalampos N Moschopoulos, Georgios A Pavlopoulos, Reinhard Schneider, Spiridon D Likothanassis, Sophia Kossida BMC Bioinformatics 2009, 10(Suppl 6):S11 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

'Brukin2D': a 2D visualization and comparison tool for LC-MS data

Dimosthenis Tsagkrasoulis, Panagiotis Zerefos, George Loudos, Antonia Vlahou, Marc Baumann, Sophia Kossida BMC Bioinformatics 2009, 10(Suppl 6):S12 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

A chemogenomics view on protein-ligand spaces

Helena Strömbergsson, Gerard J Kleywegt BMC Bioinformatics 2009, 10(Suppl 6):S13 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

iBarcode.org: web-based molecular biodiversity analysis

Gregory AC Singer, Mehrdad Hajibabaei BMC Bioinformatics 2009, 10(Suppl 6):S14 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria

Monica Santamaria, Saverio Vicario, Graziano Pappadà, Gaetano Scioscia, Claudio Scazzocchio, Cecilia Saccone BMC Bioinformatics 2009, 10(Suppl 6):S15 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Modeling heterocyst pattern formation in cyanobacteria

Ziomara P Gerdtzen, J Cristian Salgado, Axel Osses, Juan A Asenjo, Ivan Rapaport, Barbara A Andrews BMC Bioinformatics 2009, 10(Suppl 6):S16 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Deciphering the connectivity structure of biological networks using MixNet

Franck Picard, Vincent Miele, Jean-Jacques Daudin, Ludovic Cottret, Stéphane Robin BMC Bioinformatics 2009, 10(Suppl 6):S17 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX

Álvaro Martínez Barrio, Erik Lagercrantz, Göran O Sperber, Jonas Blomberg, Erik Bongcam-Rudloff BMC Bioinformatics 2009, 10(Suppl 6):S18 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Visualising biological data: a semantic approach to tool and database integration

Steve Pettifer, David Thorne, Philip McDermott, James Marsh, Alice Villéger, Douglas B Kell, Teresa K Attwood BMC Bioinformatics 2009, 10(Suppl 6):S19 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application

Maria G Roubelakis, Pantelis Zotos, Georgios Papachristoudis, Ioannis Michalopoulos, Kalliopi I Pappa, Nicholas P Anagnou, Sophia Kossida BMC Bioinformatics 2009, 10(Suppl 6):S20 (16 June 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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