Table 3

Prediction performance of KnowPredsite, ngLOC, and Blast-hit

Overall Accuracy (%)

Methods

Top 1

Top 2

Top 3

Top 4


Single-localized

*KnowPredsite

92.0

95.7

96.8

98.1

#KnowPredsite

91.7

95.4

96.6

97.9

ngLOC

88.8

92.2

94.5

96.3

Blast-hit

86.0

-

-

-


Multi-localized

(at least 1 correct)

*KnowPredsite

90.8

96.4

98.2

98.9

#KnowPredsite

90.1

96.1

98.1

98.9

ngLOC

81.9

92.0

96.1

97.4

Blast-hit

78.8

-

-

-


Multi-localized

(both correct)

*KnowPredsite

74.3

83.3

88.7

#KnowPredsite

72.1

82.2

87.5

ngLOC

59.7

73.8

83.2

Blast-hit

45.7

-

-


*KnowPredsite represents the experiment result using leave-one-out cross validation; #KnowPredsite represents the experiment result using 10-fold cross validation.

Lin et al. BMC Bioinformatics 2009 10(Suppl 15):S8   doi:10.1186/1471-2105-10-S15-S8

Open Data