Table 3

Top 20 relevant terms for methods.

Method

Terms

x-ray

(MI:0114)

structure, crystal, residue, molecule, model, site, form, interface, chain, contact, bond, hydrogen, helix, pp, record, helical, window, surface, linker, segment

two hybrid

(MI:0018)

yeast, two-hybrid, interact, assay, fusion, system, plasmid, clone, cdna, screen, bait, sequence, acid, amino, encode, site, pp, record, domain, plant

pull down

(MI:0096)

gst, fusion, glutathione, pull-down, assay, interact, bead, buffer, wash, yeast, scopus, min, incubate, two-hybrid, antibody, pp, record, system, plasmid, sequence

anti tag coip

(MI:0007)

record, pp, cite, yeast, antibody, strain, panel, anti-flag, saccharomyces, flag, cerevisia, growth, blot, western, flag-tagg, gene, grow, medline, ha, anti-ha

anti bait coip

(MI:0006)

control, buffer, pp, record, isi, bait, cancer, antibody, extract, c-terminus, bead, sirna, tumor, stain, gene, yeast, sds, luciferase, embo, cdna

coip

(MI:0019)

antibody, pp, record, extract, yeast, domain, sequence, expression, blot, cdna, clone, activity, luciferase, growth, transfect, acid, fusion, sirna, mmedta, link

We collect top 20 terms for 6 different methods according to Eq(15) from the corpus.

Wang et al. BMC Bioinformatics 2009 10(Suppl 1):S55   doi:10.1186/1471-2105-10-S1-S55