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BMC Bioinformatics

Supplements

Editor-in-Chief
Melissa Norton, MD

Biology Editor
Penelope Webb, PhD

In-house Editor
Tim Sands PhD



BMC Bioinformatics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 10 Suppl 1
Selected papers from the Seventh Asia-Pacific Bioinformatics Conference (APBC 2009)
Research
from The Seventh Asia Pacific Bioinformatics Conference (APBC 2009)
Beijing, China. 1316 January 2009
Edited by Michael Q Zhang, Michael S Waterman and Xuegong Zhang

Introduction
The Seventh Asia Pacific Bioinformatics Conference (APBC2009)
Michael Q Zhang, Michael S Waterman, Xuegong Zhang
BMC Bioinformatics 2009, 10(Suppl 1):S1 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Genome aliquoting with double cut and join
Robert Warren, David Sankoff
BMC Bioinformatics 2009, 10(Suppl 1):S2 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Pathogenic Bacillus anthracis in the progressive gene losses and gains in adaptive evolution
GX Yu
BMC Bioinformatics 2009, 10(Suppl 1):S3 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
SE: an algorithm for deriving sequence alignment from a pair of superimposed structures
Chin-Hsien Tai, James J Vincent, Changhoon Kim, Byungkook Lee
BMC Bioinformatics 2009, 10(Suppl 1):S4 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets
Guan Ning Lin, Zhipeng Cai, Guohui Lin, Sounak Chakraborty, Dong Xu
BMC Bioinformatics 2009, 10(Suppl 1):S5 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Maximum independent sets of commuting and noninterfering inversions
Krister M Swenson, Yokuki To, Jijun Tang, Bernard ME Moret
BMC Bioinformatics 2009, 10(Suppl 1):S6 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Inversion-based genomic signatures
Krister M Swenson, Bernard ME Moret
BMC Bioinformatics 2009, 10(Suppl 1):S7 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Triplet supertree heuristics for the tree of life
Harris T Lin, J Gordon Burleigh, Oliver Eulenstein
BMC Bioinformatics 2009, 10(Suppl 1):S8 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Sorting by reversals, block interchanges, tandem duplications, and deletions
Martin Bader
BMC Bioinformatics 2009, 10(Suppl 1):S9 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Improved algorithms for approximate string matching (extended abstract)
Dimitris Papamichail, Georgios Papamichail
BMC Bioinformatics 2009, 10(Suppl 1):S10 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Simultaneous phylogeny reconstruction and multiple sequence alignment
Feng Yue, Jian Shi, Jijun Tang
BMC Bioinformatics 2009, 10(Suppl 1):S11 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Methods for comparative metagenomics
Daniel H Huson, Daniel C Richter, Suparna Mitra, Alexander F Auch, Stephan C Schuster
BMC Bioinformatics 2009, 10(Suppl 1):S12 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
DNA motif alignment by evolving a population of Markov chains
Chengpeng Bi
BMC Bioinformatics 2009, 10(Suppl 1):S13 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Parallel short sequence assembly of transcriptomes
Benjamin G Jackson, Patrick S Schnable, Srinivas Aluru
BMC Bioinformatics 2009, 10(Suppl 1):S14 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Finding optimal threshold for correction error reads in DNA assembling
Francis YL Chin, Henry CM Leung, Wei-Lin Li, Siu-Ming Yiu
BMC Bioinformatics 2009, 10(Suppl 1):S15 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Crystallizing short-read assemblies around seeds
Mohammad Sajjad Hossain, Navid Azimi, Steven Skiena
BMC Bioinformatics 2009, 10(Suppl 1):S16 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
Short read DNA fragment anchoring algorithm
Wendi Wang, Peiheng Zhang, Xinchun Liu
BMC Bioinformatics 2009, 10(Suppl 1):S17 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

Research
REMAS: a new regression model to identify alternative splicing events from exon array data
Hao Zheng, Xingyi Hang, Ji Zhu, Minping Qian, Wubin Qu, Chenggang Zhang, Minghua Deng
BMC Bioinformatics 2009, 10(Suppl 1):S18 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
A voting approach to identify a small number of highly predictive genes using multiple classifiers
Md Rafiul Hassan, M Maruf Hossain, James Bailey, Geoff Macintyre, Joshua WK Ho, Kotagiri Ramamohanarao
BMC Bioinformatics 2009, 10(Suppl 1):S19 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

Research
Knowledge driven decomposition of tumor expression profiles
Martin H van Vliet, Lodewyk FA Wessels, Marcel JT Reinders
BMC Bioinformatics 2009, 10(Suppl 1):S20 (30January2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]

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