Supplements
Editor-in-Chief Melissa Norton, MD
Biology Editor Penelope Webb, PhD
In-house Editor Tim Sands PhD
BMC Bioinformatics publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 10 Suppl 1
Selected papers from the Seventh Asia-Pacific Bioinformatics Conference (APBC 2009)
Research
from The Seventh Asia Pacific Bioinformatics Conference (APBC 2009)
Beijing, China. 13
16 January 2009
Edited by Michael Q Zhang, Michael S Waterman and Xuegong Zhang
Introduction
The Seventh Asia Pacific Bioinformatics Conference (APBC2009) Michael Q Zhang, Michael S Waterman, Xuegong Zhang BMC Bioinformatics 2009, 10 (Suppl 1):S1 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Genome aliquoting with double cut and join Robert Warren, David Sankoff BMC Bioinformatics 2009, 10 (Suppl 1):S2 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Pathogenic Bacillus anthracis in the progressive gene losses and gains in adaptive evolution GX Yu BMC Bioinformatics 2009, 10 (Suppl 1):S3 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
SE: an algorithm for deriving sequence alignment from a pair of superimposed structures Chin-Hsien Tai, James J Vincent, Changhoon Kim, Byungkook Lee BMC Bioinformatics 2009, 10 (Suppl 1):S4 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets Guan Ning Lin, Zhipeng Cai, Guohui Lin, Sounak Chakraborty, Dong Xu BMC Bioinformatics 2009, 10 (Suppl 1):S5 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Maximum independent sets of commuting and noninterfering inversions Krister M Swenson, Yokuki To, Jijun Tang, Bernard ME Moret BMC Bioinformatics 2009, 10 (Suppl 1):S6 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Inversion-based genomic signatures Krister M Swenson, Bernard ME Moret BMC Bioinformatics 2009, 10 (Suppl 1):S7 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Triplet supertree heuristics for the tree of life Harris T Lin, J Gordon Burleigh, Oliver Eulenstein BMC Bioinformatics 2009, 10 (Suppl 1):S8 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Sorting by reversals, block interchanges, tandem duplications, and deletions Martin Bader BMC Bioinformatics 2009, 10 (Suppl 1):S9 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Improved algorithms for approximate string matching (extended abstract) Dimitris Papamichail, Georgios Papamichail BMC Bioinformatics 2009, 10 (Suppl 1):S10 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Simultaneous phylogeny reconstruction and multiple sequence alignment Feng Yue, Jian Shi, Jijun Tang BMC Bioinformatics 2009, 10 (Suppl 1):S11 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Methods for comparative metagenomics Daniel H Huson, Daniel C Richter, Suparna Mitra, Alexander F Auch, Stephan C Schuster BMC Bioinformatics 2009, 10 (Suppl 1):S12 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
DNA motif alignment by evolving a population of Markov chains Chengpeng Bi BMC Bioinformatics 2009, 10 (Suppl 1):S13 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Parallel short sequence assembly of transcriptomes Benjamin G Jackson, Patrick S Schnable, Srinivas Aluru BMC Bioinformatics 2009, 10 (Suppl 1):S14 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Finding optimal threshold for correction error reads in DNA assembling Francis YL Chin, Henry CM Leung, Wei-Lin Li, Siu-Ming Yiu BMC Bioinformatics 2009, 10 (Suppl 1):S15 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Crystallizing short-read assemblies around seeds Mohammad Sajjad Hossain, Navid Azimi, Steven Skiena BMC Bioinformatics 2009, 10 (Suppl 1):S16 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
Short read DNA fragment anchoring algorithm Wendi Wang, Peiheng Zhang, Xinchun Liu BMC Bioinformatics 2009, 10 (Suppl 1):S17 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
Research
REMAS: a new regression model to identify alternative splicing events from exon array data Hao Zheng, Xingyi Hang, Ji Zhu, Minping Qian, Wubin Qu, Chenggang Zhang, Minghua Deng BMC Bioinformatics 2009, 10 (Suppl 1):S18 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
A voting approach to identify a small number of highly predictive genes using multiple classifiers Md Rafiul Hassan, M Maruf Hossain, James Bailey, Geoff Macintyre, Joshua WK Ho, Kotagiri Ramamohanarao BMC Bioinformatics 2009, 10 (Suppl 1):S19 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ] [Cited on BioMed Central ]
Research
Knowledge driven decomposition of tumor expression profiles Martin H van Vliet, Lodewyk FA Wessels, Marcel JT Reinders BMC Bioinformatics 2009, 10 (Suppl 1):S20 (30 January 2009) [Abstract ] [Full text ] [PDF ] [PubMed ] [Related articles ]
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