|
|
|
|
|
1.
713 Accesses
|
Crystal structure of a new benzoic acid inhibitor of influenza neuraminidase bound with a new tilt induced by overpacking sub-site C6
Lalitha Venkatramani, Eric S Johnson, Gundarao Kolavi, Gillian M Air, Wayne J Brouillette, Blaine HM Mooers BMC Structural Biology 2012, 12:7 (6 May 2012)
Abstract | Provisional PDF
| PubMed
|
Editor’s summary
The crystal structure of a novel benzoic acid inhibitor of influenza neuraminidase reveals an increased number of contacts compared to previous inhibitors, due to a tilt in the position of the benzene ring that maximizes these interactions.
|
|
|
2.
629 Accesses
|
Reliable structural interpretation of small-angle scattering data from bio-molecules in solution - the importance of quality control and a standard reporting framework
David A Jacques, Jules M Guss, Jill Trewhella BMC Structural Biology 2012, 12:9 (17 May 2012)
Abstract | Provisional PDF
| PubMed |
|
Editor’s summary
Jill Trewhella and colleagues describe the rationale behind guidelines recently issued by The International Union of Crystallography for the reporting of biomolecular structures derived from Small-Angle Scattering (SAS) data.
|
|
|
3.
599 Accesses
|
The Ramachandran plots of glycine and pre-proline
Bosco K Ho, Robert Brasseur BMC Structural Biology 2005, 5:14 (16 August 2005)
Abstract | Full text | PDF | PubMed
|
|
|
4.
469 Accesses
|
Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins
Lakshmipuram S Swapna, Swapnil Mahajan, Alexandre de Brevern, Narayanaswamy Srinivasan BMC Structural Biology 2012, 12:6 (3 May 2012)
Abstract | Provisional PDF
| PubMed
|
|
|
5.
416 Accesses
|
Crystal structures from the Plasmodium peroxiredoxins: new insights into oligomerization and product binding
Wei Qiu, Aiping Dong, Juan C Pizarro, Alexei Botchkarsev, Jinrong Min, Amy K Wernimont, Tanya Hills, Raymond Hui, Jennifer D Artz BMC Structural Biology 2012, 12:2 (19 March 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Structural characterization of peroxiredoxins from Plasmodium species identifies the novel toroid octameric oligomer of PyTrx-Px1 and confirms that PvTrx-Px1 is a hydrogen peroxide-sensitive peroxiredoxin, which may aid targeting of these antioxidant enzymes in drug design
|
|
|
6.
381 Accesses
|
Structural adaptation of extreme halophilic proteins through decrease of conserved hydrophobic contact surface
Alessandro Siglioccolo, Alessandro Paiardini, Maria Piscitelli, Stefano Pascarella BMC Structural Biology 2011, 11:50 (22 December 2011)
Abstract | Full text | PDF | PubMed
|
|
|
7.
376 Accesses
|
Are different stoichiometries feasible for complexes between
lymphotoxin-alpha and tumor necrosis factor receptor 1?
Nahren M Mascarenhas, Johannes Kästner BMC Structural Biology 2012, 12:8 (8 May 2012)
Abstract | Provisional PDF
| PubMed
|
|
|
8.
365 Accesses
|
A transcriptional-switch model for Slr1738-controlled gene expression in the cyanobacterium Synechocystis
Paul Garcin, Olivier Delalande, Ju-Yuan Zhang, Corinne Cassier-Chauvat, Franck Chauvat, Yves Boulard BMC Structural Biology 2012, 12:1 (30 January 2012)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
A 3D structure of the complex between the PerR-like regulator Slr1738 and its target DNA, which controls metal and oxidative stress response in the cyanobaterium Synechocystis, provides insight into stability and recognition in protein-DNA interactions
|
|
|
9.
328 Accesses
|
Exploring functionally related enzymes using radially distributed properties of active sites around the reacting points of bound ligands
Keisuke Ueno, Katsuhiko Mineta, Kimihito Ito, Toshinori Endo BMC Structural Biology 2012, 12:5 (26 April 2012)
Abstract | Provisional PDF
| PubMed
|
|
|
10.
287 Accesses
|
Functional region prediction with a set of appropriate homologous sequences-an index for sequence selection by integrating structure and sequence information with spatial statistics
Wataru Nemoto, Hiroyuki Toh BMC Structural Biology 2012, 12:11 (29 May 2012)
Abstract | Provisional PDF
| PubMed
|
|
|
11.
281 Accesses
|
Structural model of nicotinic acetylcholine receptor isotypes bound to acetylcholine and nicotine
Matthieu Schapira, Ruben Abagyan, Maxim Totrov BMC Structural Biology 2002, 2:1 (18 January 2002)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
|
|
12.
256 Accesses
|
Central domain deletions affect the SAXS solution structure and function of Yeast Hsp40 proteins Sis1 and Ydj1
Julio C Silva, Julio C Borges, Douglas M Cyr, Carlos HI Ramos, Iris L Torriani BMC Structural Biology 2011, 11:40 (19 October 2011)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Deletion of the central ZFLR-CTDI domain in the Hsp40 protein Ydj1 changes the relative position of the J-domain, suggesting that interactions between these domains are important in determining the unique quaternary structure of Type I Hsp40s
|
|
|
13.
250 Accesses
|
Structure of a lectin from Canavalia gladiata seeds: new structural insights for old molecules
Plínio Delatorre, Bruno AM Rocha, Emmanuel P Souza, Taianá M Oliveira, Gustavo A Bezerra, Frederico BMB Moreno, Beatriz T Freitas, Tatiane Santi-Gadelha, Alexandre H Sampaio, Walter F Azevedo, Benildo S Cavada BMC Structural Biology 2007, 7:52 (2 August 2007)
Abstract | Full text | PDF | PubMed
|
|
|
14.
242 Accesses
|
Crystal structures of a purple acid phosphatase, representing different steps of this enzyme's catalytic cycle
Gerhard Schenk, Tristan W Elliott, Eleanor Leung, Lyle E Carrington, Nataša Mitić, Lawrence R Gahan, Luke W Guddat BMC Structural Biology 2008, 8:6 (31 January 2008)
Abstract | Full text | PDF | PubMed
|
|
|
15.
242 Accesses
|
Modeling structure and flexibility of Candida antarctica lipase B in organic solvents
Peter Trodler, Jürgen Pleiss BMC Structural Biology 2008, 8:9 (6 February 2008)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
|
|
16.
241 Accesses
|
An in silico study of the molecular basis of B-RAF activation and conformational stability
Filip F Fratev, Svava Jónsdóttir BMC Structural Biology 2009, 9:47 (22 July 2009)
Abstract | Full text | PDF | PubMed
|
|
|
17.
240 Accesses
|
Natural history of S-adenosylmethionine-binding proteins
Piotr Z Kozbial, Arcady R Mushegian BMC Structural Biology 2005, 5:19 (14 October 2005)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
Analysis of the phyletic distribution and structural similarities of S-adenosylmethionine-binding proteins indicate that two widespread folds, the Rossman fold and TIM barrel, have repeatedly evolved for diverse types of reactions that require S-adenosylmethionine.
|
|
|
18.
221 Accesses
|
Crystal structural analysis of human serum albumin complexed with hemin and fatty acid
Patricia A Zunszain, Jamie Ghuman, Teruyuki Komatsu, Eishun Tsuchida, Stephen Curry BMC Structural Biology 2003, 3:6 (7 July 2003)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
The structure of a human serum albumin-hemin-myristate complex reveals a new conformation plus key polar and hydrophobic interactions that should be useful in designing HSA-heme complexes with modified oxygen-binding properties.
|
|
|
19.
214 Accesses
|
A structural model of the E. coli PhoB Dimer in the transcription initiation complex
Chang-Shung Tung, Benjamin H McMahon BMC Structural Biology 2012, 12:3 (20 March 2012)
Abstract | Full text | PDF | PubMed
|
|
|
20.
203 Accesses
|
Correction: Prediction and analysis of the modular structure of cytochrome P450 monooxygenases
Demet Sirim, Michael Widmann, Florian Wagner, Jurgen Pleiss BMC Structural Biology 2012, 12:4 (25 April 2012)
Abstract | Provisional PDF
| PubMed
|
|
|
21.
195 Accesses
|
The Host-Pathogen interaction of human cyclophilin A and HIV-1 Vpr requires specific N-terminal and novel C-terminal domains
Sara MØ Solbak, Victor Wray, Ole Horvli, Arnt J Raae, Marte I Flydal, Petra Henklein, Peter Henklein, Manfred Nimtz, Ulrich Schubert, Torgils Fossen BMC Structural Biology 2011, 11:49 (20 December 2011)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Identification of a region of HIV-1 Vpr which binds specifically to the host cellular factor CypA with similar affinity to full-length Vpr is the first such binding domain described that involves no proline residues.
|
|
|
22.
176 Accesses
|
LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation
Bingding Huang, Michael Schroeder BMC Structural Biology 2006, 6:19 (24 September 2006)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
|
|
23.
175 Accesses
|
Modeling holo-ACP:DH and holo-ACP:KR complexes of modular polyketide synthases: a docking and molecular dynamics study
Swadha Anand, Debasisa Mohanty BMC Structural Biology 2012, 12:10 (28 May 2012)
Abstract | Provisional PDF
| PubMed
|
|
|
24.
166 Accesses
|
The structure of the leukemia drug imatinib bound to human quinone reductase 2 (NQO2)
Jonathan A Winger, Oliver Hantschel, Giulio Superti-Furga, John Kuriyan BMC Structural Biology 2009, 9:7 (24 February 2009)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
|
Editor’s summary
The tyrosine-kinase inhibitor imatinib is revealed by X-ray crystallography to occupy the active site of the oxidoreductase NQO2, a secondary target whose inhibition may be responsible for side effects in leukaemia patients receiving treatment with the drug.
|
|
|
25.
164 Accesses
|
Structural analysis of heme proteins: implications for design and prediction
Ting Li, Herbert L Bonkovsky, Jun-tao Guo BMC Structural Biology 2011, 11:13 (3 March 2011)
Abstract | Full text | PDF | PubMed
|
Editor’s summary
Heme binding pockets provide a hydrophobic environment for the heme ring structure, being enriched in aromatic and non-polar amino acids, with most heme proteins undergoing small conformational changes after heme binding.
|