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Volume 7 (2007) - July 2007

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Research article   Open Access Highly Accessed

Comparative Analysis of Protein Structure Alignments

Gabriele Mayr, Francisco S Domingues, Peter Lackner BMC Structural Biology 2007, 7:50 (26 July 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

A rigorous framework for objectively comparing 3D protein structure alignment programs shows that although alignments produced by different methods tend to agree, there is still room for improvement on more challenging protein pairs.

Research article   Open Access Highly Accessed

Search for allosteric disulfide bonds in NMR structures

Bryan Schmidt, Philip J Hogg BMC Structural Biology 2007, 7:49 (20 July 2007)

Abstract | Full text | PDF | PubMed

Research article   Open Access

Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily

Elena M Ibryashkina, Marina V Zakharova, Vladimir B Baskunov, Ekaterina S Bogdanova, Maxim O Nagornykh, Marat M Den'mukhamedov, Bogdan S Melnik, Andrzej Kolinski, Dominik Gront, Marcin Feder, Alexander S Solonin, Janusz M Bujnicki BMC Structural Biology 2007, 7:48 (12 July 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The type II restriction endonuclease R.Eco29kI belongs to the GIY-YIG superfamily of DNA-cleaving enzymes, and so is unrelated to all other restriction endonucleases studied to date.

Research article   Open Access Highly Accessed

Crystal structure of hyperthermophilic esterase EstE1 and the relationship between its dimerization and thermostability properties

Jung-Sue Byun, Jin-Kyu Rhee, Nam Kim, JeongHyeok Yoon, Dong-Uk Kim, Eunhee Koh, Jong-Won Oh, Hyun-Soo Cho BMC Structural Biology 2007, 7:47 (12 July 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The dimer form of the esterase EstE1 derives its thermostability primarily from hydrophobic interactions between beta strands and also partly from intermolecular salt bridges, which provides clues useful for designing other heat resistant esterases.

Methodology article   Open Access

(NZ)CH...O Contacts assist crystallization of a ParB-like nuclease

Neil Shaw, Chongyun Cheng, Wolfram Tempel, Jessie Chang, Joseph Ng, Xin-Yu Wang, Sarah Perrett, John Rose, Zihe Rao, Bi-Cheng Wang, Zhi-Jie Liu BMC Structural Biology 2007, 7:46 (7 July 2007)

Abstract | Full text | PDF | PubMed

Research article   Open Access Highly Accessed

Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly

Norbert Schormann, Alexei Grigorian, Alexandra Samal, Raman Krishnan, Lawrence DeLucas, Debasish Chattopadhyay BMC Structural Biology 2007, 7:45 (2 July 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central


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