Table 1

Number of jobs, average run time (in minutes), and maximum memory used (in GB) for the major steps of preprocessing
5 exomes 2 whole genomes
# jobs Average time Maximum memory # jobs Average time Maximum memory
Alignment 38 43.6 4.3 82 277.5 4.5
Realignment 18 29.0 3.5 36 181.7 4.8
Recalibration 80 7.0 3.3 32 109.3 2.9
SNP calling 136 1.6 3.2 136 9.8 3.1
Annotation 24 28.6 2.7 24 29.7 2.7
Total 311 316

Torstenson et al.

Torstenson et al. BMC Research Notes 2013 6:5   doi:10.1186/1756-0500-6-5

Open Data