Table 2

The number of reads for each microbe genus per gut type (pooled samples)
Phylum Genus Ps AMG Ra AMG Ra PMG Total
Actinobacteria Arthrobacter 3 3
Actinobacteria Brevibacterium 1 1 2 4
Actinobacteria Conexibacter 2 2
Actinobacteria Janibacter 2 2
Actinobacteria Propionibacterium 2 3 11 16
Actinobacteria Sanguibacter 1 1
Actinobacteria Streptomyces 1 1
Armatimonadetes Armatimonadetes_gp5 1 1
Bacteroidetes Bacteroides 1 1
Bacteroidetes Cloacibacterium 4 4
Bacteroidetes Flavobacterium 1 1
Firmicutes Bacillus 3 1 4
Firmicutes Clostridium sensu stricto 1 1
Firmicutes Clostridium XI 1 1
Firmicutes Exiguobacterium 1 1
Firmicutes Lactococcus 1 1
Firmicutes Pelospora 2 2
Firmicutes Planifilum 2 2
Firmicutes Planococcaceae_incertae_sedis 1 1
Firmicutes Sedimentibacter 1 1
Firmicutes Staphylococcus 1 6 7
Firmicutes Streptococcus 2 2
Firmicutes Weissella 1 1
Lentisphaerae Victivallis 3 3
Proteobacteria Acidovorax 4 4 4 12
Proteobacteria Acinetobacter 7 2 4 13
Proteobacteria Alcanivorax 1 1
Proteobacteria Aquabacterium 10 4 6 20
Proteobacteria Arcobacter 10 4 3 17
Proteobacteria Azospira 1 1
Proteobacteria Belnapia 1 1
Proteobacteria Bordetella 1 1
Proteobacteria Brevundimonas 2 1 3
Proteobacteria Burkholderia 3 3
Proteobacteria Caulobacter 1 3 4
Proteobacteria Comamonas 1 1 1 3
Proteobacteria Cupriavidus 2 2 4
Proteobacteria Enhydrobacter 2 2
Proteobacteria Escherichia/Shigella 1 1 2
Proteobacteria Herbaspirillum 2 1 3
Proteobacteria Hyphomicrobium 1 1
Proteobacteria Legionella 3 3
Proteobacteria Methylobacterium 2 2 4
Proteobacteria Methyloversatilis 2 1 3
Proteobacteria Novosphingobium 5 2 7
Proteobacteria Ochrobactrum 1 2 3
Proteobacteria Pantoea 3 3
Proteobacteria Paracoccus 2 2
Proteobacteria Pelomonas 1 1
Proteobacteria Pseudomonas 4 8 4 16
Proteobacteria Raoultella 1 1
Proteobacteria Rheinheimera 1 1
Proteobacteria Rhizobacter 4 4
Proteobacteria Shewanella 1 1
Proteobacteria Simplicispira 4 4
Proteobacteria Smithella 1 1 2
Proteobacteria Sphingobium 21 6 9 36
Proteobacteria Sphingomonas 4 1 2 7
Proteobacteria Stenotrophomonas 1 1
Proteobacteria Undibacterium 1 2 3
Proteobacteria Zoogloea 3 1 4
Tenericutes Haloplasma 1 1
Tenericutes Spiroplasma 15 65 5,331 5,411
TM7 TM7_genera_incertae_sedis 6 1 7
Sum 112 171 5,396 5,679

The taxomic assignment at genus level was based on RDP CLASSIFIER. Ps = P. schultei. Ra = R. artemis.

Shelomi et al.

Shelomi et al. BMC Research Notes 2013 6:368   doi:10.1186/1756-0500-6-368

Open Data