Table 1

Summary of reads received from phasmid samples
P. schultei anterior midgut R. artemis anterior midgut R. artemis posterior midgut Total
# of positive samples 4 4 3
All sequences:
# reads passed quality control 9,255 9,697 7,054 26,006
Average # reads per sample 2,313.75 2,424.25 2,351.33
# 100% id OTUs 8,090
# 99% id OTUs 2,702
# 97% id OTUs 844
After RDP CLASSIFIER:
# chloroplast 16S 14,541
# mitochondrial 16S and other contaminants 5,786
# bacterial 16S reads 112 171 5,396 5,679
Average # reads per sample 28 43 1,799
# reads (# OTUs) by phylum
 Actinobacteria 3(2) 13(9) 13(4) 29(13)
 Armatimonadetes 0 1(1) 0 1(1)
 Bacteroidetes 1(1) 5(3) 0 6(4)
 Firmicutes 3(3) 16(9) 5(4) 24(15)
 Lentisphaerae 3(1) 0 0 3(1)
 Proteobacteria 87(37) 65(39) 45(26) 197(75)
 Tenericutes 15(6) 65(10) 5,332(47) 5,412(47)
 TM7 0 6(5) 1(1) 7(6)

Phyla Based on RDP CLASSIFIER results.

Shelomi et al.

Shelomi et al. BMC Research Notes 2013 6:368   doi:10.1186/1756-0500-6-368

Open Data