Table 3 |
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|
Main average indices in different sequencing strategies for 100 genomes (200 bp read length, 8 kb paired end library) |
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|
ST |
GCE(%) |
SBE(%) |
IDR(%) |
FLT(%) |
FDT(%) |
CN |
NB |
SN |
|
|
||||||||
|
6 × SE + 10 × PE |
98.17144 |
0.003195 |
0.000334 |
0.4401864 |
0.2416131 |
61.15 |
253000.7 |
3.625 |
|
|
||||||||
|
10 × SE + 10 × PE |
98.15661 |
0.004024 |
0.000317 |
0.4076573 |
0.2861061 |
54.33 |
290749.3 |
3.7188 |
|
|
||||||||
|
15 × SE + 10 × PE |
98.16915 |
0.004743 |
0.000305 |
0.3916122 |
0.261398 |
53.47 |
301038.3 |
3.64 |
|
|
||||||||
|
20 × SE + 10 × PE |
98.17177 |
0.004877 |
0.000309 |
0.409125 |
0.2509012 |
52.98 |
289864.6 |
3.6 |
|
|
||||||||
|
ST: Sequencing Strategy SE: Single end reads PE: paired end reads GOE: Genome Coverage Rate SBE: Single Base Error Rate IDR: Indel Error Rate FLT: False Gene Duplication Rate FDT: False Gene Loss Rate CN: Contig Number |
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|
Jiang et al. BMC Research Notes 2012 5:80 doi:10.1186/1756-0500-5-80 |
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