Table 2 |
||||||||
|
Main average indices in different sequencing strategies for 100 genomes (100 bp read length, 8 kb paired end library) |
||||||||
|
ST |
GCE(%) |
SBE(%) |
IDR(%) |
FLT(%) |
FDT(%) |
CN |
NB |
SN |
|
|
||||||||
|
6 × SE + 10 × PE |
98.06775 |
0.00498 |
0.000339 |
0.4892094 |
0.190552 |
72.11 |
209661.1 |
4 |
|
|
||||||||
|
10 × SE + 10 × PE |
98.09051 |
0.003982 |
0.000324 |
0.4596817 |
0.180621 |
63.08 |
240424.9 |
3.8367 |
|
|
||||||||
|
15 × SE + 10 × PE |
98.08065 |
0.004018 |
0.000322 |
0.4731213 |
0.1733068 |
61.77 |
241163.8 |
3.9184 |
|
|
||||||||
|
20 × SE + 10 × PE |
98.10211 |
0.004231 |
0.000339 |
0.4754001 |
0.1754001 |
59.65 |
244658.8 |
3.7642 |
|
|
||||||||
|
ST: Sequencing Strategy SE: Single end reads PE: paired end reads GOE: Genome Coverage Rate SBE: Single Base Error Rate IDR: Indel Error Rate FLT: False Gene Duplication Rate FDT: False Gene Loss Rate CN: Contig Number |
||||||||
|
Jiang et al. BMC Research Notes 2012 5:80 doi:10.1186/1756-0500-5-80 |
||||||||
