Table 2 |
||||||||
| Identification of functional modules in the AC landscape | ||||||||
| Module | Correlation cut-off | Description of the key GO term | GO enrichment P-value | |||||
| >0.95 | >0.90 | >0.85 | >0.80 | >0.70 | none | |||
| Mitochondria | 291 | 39 | 512 | 40 | 35 | 35 | mitochondrial electron transport, NADH to ubiquinone | 2.0370*102E-26 |
| Ribosome | 18 | 37 | 23 | 29 | 33 | translation | 3.7793*103.8E-47 | |
| Muscle | 6 | 10 | 12 | 10 | 10 | 10 | muscle contraction, muscle system process | 3.0278*103E-8 |
| Regulation of ubiquitin-protein ligase activity | 8 | 13 | 11 | nd3 | negative regulation of ubiquitin-protein ligase activity | 1.2510*101.3E-5 | ||
| Translation | 6 | nd | translational elongation | 1.1387*101.1E-8 | ||||
1 Number of genes in each module for each correlation cut-off of the “AC” landscape was calculated using the MCODE plug-in in Cytoscape. A list of genes in each module is included in Additional file 3.
2 Bold values have been taken as the optimal size of the module.
3 Module not detected.
Sun et al. BMC Research Notes 2012 5:632 doi:10.1186/1756-0500-5-632
