Email updates

Keep up to date with the latest news and content from BMC Research Notes and BioMed Central.

Open Access Research article

Lung Cancer Signature Biomarkers: tissue specific semantic similarity based clustering of Digital Differential Display (DDD) data

Mousami Srivastava, Pankaj Khurana and Ragumani Sugadev*

Author Affiliations

Bioinformatics Group, Defence Institute of Physiology and Allied Sciences, Lucknow Road, Timarpur, Delhi-110054, India

For all author emails, please log on.

BMC Research Notes 2012, 5:617  doi:10.1186/1756-0500-5-617

Published: 2 November 2012

Additional files

Additional file 1:

Table S1. DDD1- The complete list of differentially expressed normal lung tissues (11 libraries) and other normal tissues (251 libraries) with their fold change and transcript frequency values of Pool A and B. Table S2. DDD2- The complete list of differentially expressed normal lung tissues (11 libraries) and lung cancer tissues (8 libraries) with their fold change and transcript frequency values of Pool A and B. Table S3. The DDD1complete conversion list of unigene identifier to Entrez gene id. Table S4. The DDD2complete conversion list of unigene identifier to Entrez gene id.

Format: XLS Size: 586KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

Table S1. The complete lists of 76 genes from DDD1 were differentially expressed in DDD2. Table S2. The complete list of 58 genes after removing 18 genes expressed in all types of cancers from the 76 genes.

Format: XLS Size: 72KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Table S1. Number of unique Unigene identifiers and ≥2 fold present in DDD1 and DDD2 Figure: Three- way Venn diagram of DDD1, DDD2 and genes expressing in all types of cancers. Table S2. The complete list of genes and their symbols in different intersections (A to G) of Venn diagram were given.

Format: PDF Size: 184KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

Table S1. The complete list of genes expressed in all type of cancers (Chen et al., [2006]).

Format: XLS Size: 52KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

Table S1. The complete list of Adult Human Lung Tissue specific genes from TiSGeD having SPM ≥ 0.9. Table S2. The TiSGeD gene symbol conversion to Enterz ID.

Format: XLS Size: 40KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data