Table 1

List of Genes, their SNPs and positions, and genotyping data based on the whole cohort (460 subjects)
Gene Gene location SNP _ID Positiona SNP SNP location Discrepancy rateb Call ratec
DRD1 5q35.1 rs5326 174802802 G > A 5'-UTR 0.25% 99%
DRD2 11q23 rs1800496 112788698 C > T Exon 7 0.00% 100%
rs6277 112788669 T > C 3'-UTR 0.15% 99%
rs2511521 112790509 T > C Intron 4 0.00% 100%
rs12574471 112821446 C > T Intron 1 0.00% 100%
rs2283265 112790746 G > T Intron 4 0.00% 100%
rs6279 112786283 C > G 3'-UTR 0.00% 100%
rs4581480 112829684 T > C 5'-UTR 0.00% 100%
rs4350392 112840927 C > A 5'-UTR 0.00% 100%
rs10891556 112857971 G > T 5'-UTR 0.00% 100%
rs7103679 112808884 C > T Intron 1 0.00% 100%
rs4938019 112846601 T > C Intron 1 0.00% 100%
rs1076560 112788898 G > T Intron 5 0.00% 100%
rs2075654 112794276 G > A Intron 2 0.00% 100%
rs7125415 112815891 C > T 5'-UTR 0.00% 100%
rs4648317 112836742 C > T Intron 1 0.00% 100%
rs1125394 112802395 A > G Intron 1 0.00% 100%
rs4648318 112818599 A > G Intron 1 0.00% 100%
rs12363125 112791126 A > G Intron 5 0.00% 100%
rs2734836 112796449 G > A Intron 2 0.05% 99%
rs12364283 112852165 T > C 5'-UTR 0.00% 100%
rs1799978 112851561 A > G 5'-UTR 0.00% 100%
rs6275 112788687 C > T Exon 7 0.15% 99%
rs1800497 112776038 C > T Exon 8 0.00% 100%
rs1079597 112801496 A > G Intron 1 0.00% 100%
rs1799732 112851462 -C 5'-UTR 0.00% 100%
rs1800498 112796798 C > T Intron 2 0.00% 100%
DRD3 3q13.3 rs6280 115373505 C > T Exon 1 0.07% 99%
DRD4 11p15.5 rs3758653 626399 C > T 5'-UTR 0.05% 99%
DRD5 4p16.1 rs10033951 9388678 C > T 5'-UTR 0.05% 99%
SLC6A3 5p15.3 rs2963238 1497427 A > C Intron 1 0.12% 99%
rs6876225 1459036 C > A Intron 11 0.00% 100%
rs11564773 1449813 A > G Intron 14 0.00% 100%
rs1042098 1447815 T > C 3'-UTR 0.15% 99%
BDNF1 11p13 rs7103873 27656893 C > G Intron 1 0.07% 99%
rs1401635 27650567 C > G Intron 1 0.00% 100%
rs11030102 27638172 C > G Intron 1 0.00% 100%
rs17309930 27705069 A > C,G > T Intron 1 0.07% 99%
rs6265 27636492 G > A 3'-UTR 0.00% 100%
COMT 22q11.21 rs737866 18310109 T > C 5'-UTR 0.00% 100%
rs4680 18331271 A > G Exon 2 0.00% 100%

a.Chromosome positions are based on NCBI Human Genome Assembly Build 36.3.

b.Ratio of the number of discordant genotypes to the number of duplicates.

c.Ratio of the number of valid genotypes to the number of subjects genotyped (N = 460) at each locus.

AL-Eitan et al.

AL-Eitan et al. BMC Research Notes 2012 5:497   doi:10.1186/1756-0500-5-497

Open Data