Email updates

Keep up to date with the latest news and content from BMC Research Notes and BioMed Central.

Open Access Short Report

Corky, a gypsy-like retrotransposon is differentially transcribed in Quercus suber tissues

Margarida Rocheta*, Luísa Carvalho, Wanda Viegas and Leonor Morais-Cecílio

Author Affiliations

Centro de Botânica Aplicada à Agricultura (CBAA), Departamento de Recursos Naturais, Ambiente e Território, Instituto Superior de Agronomia, Universidade Técnica, de Lisboa, PORTUGAL

For all author emails, please log on.

BMC Research Notes 2012, 5:432  doi:10.1186/1756-0500-5-432

Published: 13 August 2012

Abstract

Background

Transposable elements (TEs) make up a large part of eukaryotic genomes. Due to their repetitive nature and to the fact that they harbour regulatory signals, TEs can be responsible for chromosomal rearrangements, movement of gene sequences and evolution of gene regulation and function. Retrotransposon ubiquity raises the question about their function in genomes and most are transcriptionally inactive due to rearrangements that compromise their activity. However, the activity of TEs is currently considered to have been one of the major processes in genome evolution.

Findings

We report on the characterization of a transcriptionally active gypsy-like retrotransposon (named Corky) from Quercus suber, in a comparative and quantitative study of expression levels in different tissues and distinct developmental stages through RT-qPCR. We observed Corky’s differential transcription levels in all the tissues analysed.

Conclusions

These results document that Corky’s transcription levels are not constant. Nevertheless, they depend upon the developmental stage, the tissue analysed and the potential occurring events during an individuals’ life span. This modulation brought upon by different developmental and environmental influences suggests an involvement of Corky in stress response and during development.

Keywords:
Quercus suber; Corky; LTR retroelement; RT-qPCR; Expression