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Open Access Short Report

Functional and topological characterization of transcriptional cooperativity in yeast

Daniel Aguilar* and Baldo Oliva

Author Affiliations

Structural Bioinformatics Group (GRIB/IMIM), Departament de Ciencies Experimentals i de la Salut, Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB), c/Dr. Aiguader 88, 08003, Barcelona, Spain

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BMC Research Notes 2012, 5:227  doi:10.1186/1756-0500-5-227

Published: 10 May 2012

Additional files

Additional file 1:

Co-activity between CTFPs in the regulatory hierarchy. Average co-activity (calculated using squared Spearman's correlation coefficient) between members of the same CTFP in the different layers of the regulatory hierarchy.

Format: PDF Size: 62KB Download file

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Open Data

Additional file 2:

Functional enrichment in the regulatory hierarchy in Gene Ontology terms. This document contains a table with the functional enrichment in the regulatory hierarchy in Gene Ontology terms.

Format: PDF Size: 52KB Download file

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Open Data

Additional file 3:

List of cooperative TF pairs. This file contains the list of cooperative TF pairs.

Format: TXT Size: 1KB Download file

Open Data

Additional file 4:

Regulatory hierarchy. This file contains the regulatory hierarchy.

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Open Data

Additional file 5:

Regulatory hierarchy without upwards regulatory interactions. This file contains the regulatory hierarchy with no upwards regulatory interactions.

Format: TXT Size: 1KB Download file

Open Data

Additional file 6:

Regulatory hierarchy without upwards regulatory interactions. This document explains the methods used to build this hierarchy and the results of its analysis.

Format: PDF Size: 186KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data