Generation of the storage of all substrings. This example illustrates the steps of Algorithm 1 for the input consisting of 3 genes AGAGAGGC, TCAATCCC and AATAAATC. All of the corresponding n-strings are identified with the number of occurrences stored in the leaf. The list of unique n-strings is provided, and the "siRNA seats" resulting from this computation are specified.
Baranova et al. BMC Research Notes 2011 4:168 doi:10.1186/1756-0500-4-168