Table 1 |
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Bovine genes discovered in the Angus dwarfism locus by BEAP (prior to bovine assembly.) |
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|
Gene |
Size1 |
% Similarity to Human2 |
% of transcript retrieved3 |
|
|
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|
ANTXR2 |
167.52 (3551) |
90.6 |
29.7 |
|
ANXA3 |
58.69 (1443) |
93.3 |
22.9 |
|
BMP2K |
102.55 (2158) |
91.0 |
35.5 |
|
BMP3 |
22.61 (1774) |
89.4 |
47.9 |
|
COPS4 |
40.73 (1747) |
93.7 |
100 |
|
FGF5 |
24.33 (5287) |
89.8 |
100 |
|
FRAS1 |
486.29 (15213) |
90.8 |
21.2 |
|
GDEP |
34.2 (521) |
86.0 |
100 |
|
GK2 |
1.67 (1677) |
87.9 |
100 |
|
HEL308 |
48.50 (3559) |
92.9 |
59.1 |
|
HNRPD |
20.62 (2200) |
95.1 |
100 |
|
HPSE |
42.69 (3705) |
93.3 |
66.4 |
|
MASA |
24.63 (5113) |
89.7 |
9.2 |
|
MRPL1 |
89.95 (1165) |
89.9 |
24.6 |
|
PAQR3 |
21.48 (3990) |
92.8 |
90.7 |
|
PLAC8 |
24.7 (1391) |
- |
0 |
|
PRDM8 |
24.04 (2536) |
91.6 |
76.5 |
|
PRKG2 |
116.38 (3328) |
94.6 |
100 |
|
SCD4 |
138.88 (1994) |
90.1 |
100 |
|
THAP9 |
19.53 (3627) |
90.0 |
13.8 |
|
|
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1The genomic sequence, introns and exons, is given in kilobases (kbs) and the (transcript size is presented in parenthesis, in bps). All data was queried in January of 2005, prior to completion of the bovine genome. The size estimates are based on human orthologs as found at UCSC genome browser at http://genome.ucsc.edu/ webcite 2The sequence similarity between human and bovine genes was determined by comparing exonic sequence only. 3The percentage of transcript retrieved by BEAP is based on the size of the human transcript. |
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Koltes et al. BMC Research Notes 2009 2:11 doi:10.1186/1756-0500-2-11 |
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