Table 2

Enriched pathways of differentially expressed genes.

KEGGID

P-value

Odds ratio

ExpCount

Count

Size

Term


4510

2.95E-05

5.284093

2.478357

11

200

Focal adhesion

4512

7.66E-05

7.804973

1.053302

7

85

ECM-receptor interaction

740

2.81E-04

31.125

0.13631

3

11

Riboflavin metabolism

5146

9.78E-03

4.162056

1.313529

5

106

Amoebiasis


P-value is the significant level of KEGG pathway enrichment based on fisher exact test [16]. Odds Ratio and ExpCount are the corresponding Odds Ratio and expect observed number. Count is the number of differentially expressed genes in corresponding pathway, and size is the total gene number.

Zhao et al. BMC Medical Genomics 2013 6(Suppl 1):S12   doi:10.1186/1755-8794-6-S1-S12

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