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Open Access Highly Accessed Research article

Systematic genomic identification of colorectal cancer genes delineating advanced from early clinical stage and metastasis

HoJoon Lee1, Patrick Flaherty2 and Hanlee P Ji13*

Author Affiliations

1 Division of Oncology, Stanford University School of Medicine, Stanford, CA 94305, USA

2 Department of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, MA 01605, USA

3 Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94304, USA

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BMC Medical Genomics 2013, 6:54  doi:10.1186/1755-8794-6-54

Published: 5 December 2013

Additional files

Additional file 1: Table S1:

Change clinical parameters into ordinal values.

Format: XLSX Size: 9KB Download file

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Additional file 2: Table S2:

The list of selected genes.

Format: XLSX Size: 32KB Download file

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Additional file 3:

Analysis scripts and commands.

Format: TXT Size: 1KB Download file

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Additional file 4: Figure S1:

Gene expression eigen scatter plot.

Format: PDF Size: 85KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional file 5: Table S3:

The list of samples with their clinical information.

Format: XLSX Size: 12KB Download file

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Additional file 6: Table S4:

Results of bootstrap analysis.

Format: XLSX Size: 352KB Download file

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Additional file 7: Figure S2:

Elastic-net analysis of synthetic genetic features.

Format: PDF Size: 99KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional file 8: Table S5:

The list of genes associated with MSI.

Format: XLSX Size: 22KB Download file

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Additional file 9: Table S6:

The list of genes associated with clinical stage.

Format: XLSX Size: 23KB Download file

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Additional file 10: Table S7:

The list of genes associated with T status and N status.

Format: XLSX Size: 13KB Download file

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Additional file 11: Table S8:

The list of micro RNAs associated with clinical stage.

Format: XLSX Size: 10KB Download file

Open Data