Additional file 4.

Plots showing the relationship between false discovery rate against the number of significant differentially expressed genes identified across a range values of delta using SAM analysis in Affymetrix (Desmedt) and Illumina (Nadiri) datasets independently and when combined both before and after XPN correction to identify genes differentially expressed between the basal and luminal A (A) or luminal A and luminal B subtypes (B).

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Turnbull et al. BMC Medical Genomics 2012 5:35   doi:10.1186/1755-8794-5-35