Table 1

Results of CNV calling based on different training sample batches for CNVhac and Birdsuite
Birdsuite CNVhac
G1§ G2 G3 I U Ratio G1 G2 G3 I U Ratio
NA12156 17 19 21 14 22 0.64 15 17 18 15 17 0.88
NA12878 22 21 19 15 28 0.54 29 26 24 20 33 0.61
NA18507 19 15 20 10 23 0.43 16 20 20 15 21 0.71
NA18517 20 21 21 14 25 0.56 21 21 18 16 23 0.7
NA18555 16 16 15 11 20 0.55 16 14 17 11 18 0.61
NA18956 13 12 16 9 16 0.6 20 21 24 16 24 0.67

§The number of predicted CNVs using group 1 for parameter training.

The number of CNVs in intersection set of “G1”, “G2” and “G3”.

The number of CNVs in union set of “G1”, “G2” and “G3”.

The ratio of intersection to union.

Wang et al.

Wang et al. BMC Medical Genomics 2012 5:24   doi:10.1186/1755-8794-5-24

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