Table 3

Summary of the temporal clusters obtained from the analysis of BMP4 data.

Early

Early-intermediate

Late-intermediate

Late

Undetermined


cluster ID

genes/cluster

cluster ID

genes/cluster

cluster ID

genes/cluster

cluster ID

genes/cluster

cluster ID

genes/cluster


HCC1419

2

256

1

273

8

189

6

362

3

178

(14 clusters)

5

148

4

341

11

353

7

152

10

107

14

31

9

224

12

157

13

132

Total

800

654

189

715

554


HCC1954

2

265

4

256

1

158

7

283

(12 clusters)

5

353

9

258

3

419

10

156

6

108

11

244

8

110

12

251

Total

836

1009

577

439


MDA-MB-361

6

277

3

155

8

322

1

557

5

289

(14 clusters)

13

215

7

177

9

487

2

483

10

362

14

355

12

270

11

554

4

564

Total

847

602

1363

1604

651


SK-BR-3

1

77

2

232

3

235

4

252

(17 clusters)

6

70

10

402

7

365

5

300

11

148

14

383

8

1322

13

567

16

332

9

1104

17

51

12

95

15

508

Total

913

1349

3629

552


ZR-75-30

1

601

9

140

4

2201

8

369

2

10

(18 clusters)

5

107

10

780

14

185

11

688

3

10

12

53

18

436

16

809

6

9

15

227

7

9

17

1363

13

17

Total

2351

1356

3195

1057

55


Gene clusters were classified in four temporal categories (early, early-intermediate, late-intermediate and late). Clusters with unclear profiles were classified as undetermined. The cluster ID column contains the ID number of the cluster.

Rodriguez-Martinez et al. BMC Medical Genomics 2011 4:80   doi:10.1186/1755-8794-4-80

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