Table 1

Sequencing statistics

ID

sample specification

Target size

# uniquely aligned reads

% reads on target

# of enriched regions

# of SNVs called (20×)


Pat1_B

Snap-frozen

52 Mb

66, 114, 467

75.4%

200, 175

18, 287

Pat1_B

FFPE

52 Mb

71, 590, 872

74.7%

200, 032

17, 810

Pat11_B

Snap-frozen

3.9 Mb

28, 043, 981

62.8%

12, 274

3, 000

Pat11_T

Snap-frozen

3.9 Mb

18, 302, 565

71.3%

12, 226

2, 511

Pat11_B

FFPE

3.9 Mb

9, 311, 629

67.1%

12, 175

2, 577

Pat11_T

FFPE

3.9 Mb

15, 928, 525

73.7%

12, 254

2, 883

Pat2_T

500 ng

3.9 Mb

8, 760, 773

81.1%

12, 220

2, 652

Pat2_T

1500 ng

3.9 Mb

9, 686, 320

79.9%

12, 243

2, 848

Pat2_T

3000 ng

3.9 Mb

6, 810, 410

80.4%

12, 204

2, 602

Pat3_B

Benign tissue

3.9 Mb

19, 617, 926

67.7%

12, 122

2, 002

Pat3_T

Focus-1

3.9 Mb

28, 798, 280

68.9%

12, 227

2, 328

Pat3_T

Focus-2

3.9 Mb

31, 939, 154

69.6%

11, 142

2, 513

Pat4_B

Benign tissue

3.9 Mb

8, 878, 742

66.2%

12, 281

2, 662

Pat4_T

Focus-1

3.9 Mb

8, 768, 332

64.2%

12, 288

2, 645

Pat4_T

Focus-2

3.9 Mb

9, 178, 790

65.3%

12, 269

2, 706

Pat5_B

Benign tissue

3.9 Mb

25, 957, 461

63.2%

12, 274

2, 646

Pat5_T

Focus-1

3.9 Mb

65, 372, 578

64.4%

12, 261

2, 388

Pat5_T

Focus-2

3.9 Mb

25, 957, 461

63.0%

11, 157

2, 342


ID: Identification number of the patient's tissue with B for benign tissue and T for tumor tissue.

Kerick et al. BMC Medical Genomics 2011 4:68   doi:10.1186/1755-8794-4-68

Open Data