Table 3

Gene lists produced from information provided in the corresponding papers for other cancers

Breast Cancer, Shuetz et al^a

Gastric cancer, Vecchi et al^b

Pancreatic cancer, Badea et al^c

Probe Set^d

Gene Symbol

Log FC

Probe Set^d

Gene Symbol

Log FC

Probe Set^d

Gene Symbol

Log FC

37892_at

COL11A1

6.50

37892_at

COL11A1

4.26

227140_at

INHBA

5.15

204320_at

COL11A1

4.08

217428_s_at

COL10A1

4.15

217428_s_at

COL10A1

5.00

217428_s_at

COL10A1

4.07

209955_s_at

FAP

3.40

1555778_a_at

POSTN

4.92

213764_s_at

MFAP5

3.73

235458_at

HAVCR2

3.30

212353_at

SULF1

4.63

213909_at

LRRC15

3.61

204320_at

COL11A1

3.28

226237_at

COL8A1

4.60

205941_s_at

COL10A1

3.52

205941_s_at

COL10A1

3.21

37892_at

COL11A1

4.40

210511_s_at

INHBA

3.44

204052_s_at

SFRP4

2.90

225681_at

CTHRC1

4.38

202766_s_at

FBN1

3.43

226930_at

FNDC1

2.85

202311_s_at

COL1A1

4.12

212353_at

SULF1

3.35

227140_at

INHBA

2.77

203083_at

THBS2

3.97

218468_s_at

GREM1

3.35

209875_s_at

SPP1

2.77

227566_at

HNT

3.90

215446_s_at

LOX

3.22

205422_s_at

ITGBL1

2.63

204619_s_at

CSPG2

3.87

221730_at

COL5A2

3.22

226311_at

---

2.63

229802_at

WISP1

3.80

218469_at

GREM1

3.20

222288_at

---

2.62

212464_s_at

FN1

3.69

212489_at

COL5A1

3.08

231993_at

---

2.50

205713_s_at

COMP

3.53

203083_at

THBS2

2.99

226237_at

COL8A1

2.48

221729_at

COL5A2

3.38

201505_at

LAMB1

2.97

223122_s_at

SFRP2

2.47

209955_s_at

FAP

3.37

209955_s_at

FAP

2.96

210511_s_at

INHBA

2.43

229218_at

COL1A2

3.16

209758_s_at

MFAP5

2.92

203819_s_at

IMP-3

2.39

209016_s_at

KRT7

3.13

202363_at

SPOCK

2.91

212464_s_at

FN1

2.36

210004_at

OLR1

3.03

213241_at

NY-REN-58

2.90

212353_at

SULF1

2.35

219773_at

NOX4

3.02

205479_s_at

PLAU

2.89

227995_at

---

2.34

218804_at

TMEM16A

2.90

206584_at

LY96

2.88

225681_at

CTHRC1

2.30

238617_at

---

2.87

204475_at

MMP1

2.83

204457_s_at

GAS1

2.27

224694_at

ANTXR1

2.82

202952_s_at

ADAM12

2.83

216442_x_at

FN1

2.25

228481_at

COX7A1

2.77

201792_at

AEBP1

2.81

223121_s_at

SFRP2

2.23

226311_at

ADAMTS2

2.76

204114_at

NID2

2.81

211719_x_at

FN1

2.23

201792_at

AEBP1

2.68

213790_at

ADAM12

2.80

204776_at

THBS4

2.18

203021_at

SLPI

2.65

209156_s_at

COL6A2

2.77

210495_x_at

FN1

2.15

227314_at

ITGA2

2.58

219179_at

DACT1

2.74

202800_at

SLC1A3

2.13

205499_at

SRPX2

2.44

212488_at

COL5A1

2.73

214927_at

---

2.11

226997_at

---

2.41

219087_at

ASPN

2.73

212354_at

SULF1

2.09

219179_at

DACT1

2.36

204619_s_at

CSPG2

2.70

238654_at

LOC147645

2.06

203570_at

LOXL1

2.30

204337_at

RGS4

2.69

213943_at

TWIST1

2.06

201850_at

CAPG

2.25

204620_s_at

CSPG2

2.69

236028_at

IBSP

2.05

222449_at

TMEPAI

2.19

212354_at

SULF1

2.68

228481_at

POSTN

2.00

227276_at

PLXDC2

2.16

^aBreast cancer list indicates genes overexpressed in invasive ductal carcinoma vs. ductal carcinoma in situ.

^bGastric cancer list indicates genes overexpressed in early gastric cancer vs. advanced gastric cancer.

^cPancreatic cancer list indicates genes overexpressed in pancreatic ductal adenocarcinoma vs. normal pancreatic tissue.

^dAffymetrix probe sets

Kim et al. BMC Medical Genomics 2010 3:51   doi:10.1186/1755-8794-3-51