Table 1

Lists of Data sets in the paper

Data set name

Source Site

GEO Accession

Affymetrix platform

Sample size


TCGA Ovarian Cancer

The Cancer Genome Atlas

HT_HG-U133Aa

377

CCR Ovarian Cancer

Gene Expression Omnibus

GSE9891

HG-U133_Plus_2b

285

CCR Colon Cancer

Gene Expression Omnibus

GSE14333

HG-U133_Plus_2

290

Moffitt Colon Cancer

Gene Expression Omnibus

GSE17536

HG-U133_Plus_2

177

Singapore Gastric Cancer

Gene Expression Omnibus

GSE15459

HG-U133_Plus_2

200

CCR Breast Cancer

Gene Expression Omnibus

GSE7390

HG-U133Ac

198

Wang Breast Cancer

Gene Expression Omnibus

GSE2034

HG-U133A

286

Samsung Lung Cancer

Gene Expression Omnibus

GSE8894

HG-U133_Plus_2

138

Bild Lung Cancer

Gene Expression Omnibus

GSE3141

HG-U133_Plus_2

111

Neuroblastoma tumor

Gene Expression Omnibus

GSE3960

HG_U95Av2

102

Neoadjuvant Breast Cancer

Gene Expression Omnibus

GSE4779

U133_X3P

[65] 102e

Postmortem - normal

Gene Expression Omnibus

GSE3526

HG-U133_Plus_2

353

Human body index - normal

Gene Expression Omnibus

GSE7307

HG-U133_Plus_2

504 [677]f


aAffymetrix HT Human Genome U133A Array

bAffymetrix Human Genome U133 Plus 2.0

cAffymetrix Human Genome U133A

d270 out of 341 samples are tumor samples.

e65 out of 102 are ER-negative samples.

f504 out of 677 samples are normal samples.

Kim et al. BMC Medical Genomics 2010 3:51   doi:10.1186/1755-8794-3-51

Open Data